Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   V5G23_RS14655 Genome accession   NZ_CP144925
Coordinates   2873200..2873979 (+) Length   259 a.a.
NCBI ID   WP_016885544.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2868200..2878979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS14640 (V5G23_14640) - 2868412..2868603 (-) 192 WP_003184058.1 hypothetical protein -
  V5G23_RS14645 (V5G23_14645) - 2869065..2871707 (+) 2643 WP_003184055.1 valine--tRNA ligase -
  V5G23_RS14650 (V5G23_14650) - 2871789..2873087 (+) 1299 WP_009329287.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  V5G23_RS14655 (V5G23_14655) comC 2873200..2873979 (+) 780 WP_016885544.1 A24 family peptidase Machinery gene
  V5G23_RS14660 (V5G23_14660) - 2874183..2875214 (+) 1032 WP_003184050.1 SPOR domain-containing protein -
  V5G23_RS14665 (V5G23_14665) - 2875368..2875940 (+) 573 WP_003184048.1 Maf family protein -
  V5G23_RS14670 (V5G23_14670) - 2875995..2876378 (+) 384 Protein_2828 UPF0758 domain-containing protein -
  V5G23_RS14675 (V5G23_14675) - 2876394..2877782 (-) 1389 WP_009329281.1 recombinase family protein -
  V5G23_RS14680 (V5G23_14680) - 2877822..2878301 (-) 480 WP_009329279.1 ImmA/IrrE family metallo-endopeptidase -
  V5G23_RS14685 (V5G23_14685) - 2878334..2878777 (-) 444 WP_009329277.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28107.89 Da        Isoelectric Point: 8.9928

>NTDB_id=848154 V5G23_RS14655 WP_016885544.1 2873200..2873979(+) (comC) [Bacillus licheniformis strain CP13]
MKFDSARLITMFIFYLFTAGLVLGSFFNSAGRRISEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLS
IVYPAVELSAAILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSG
AMAGGMLPLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTL
TSCFYGEPMIEWYLQTAWW

Nucleotide


Download         Length: 780 bp        

>NTDB_id=848154 V5G23_RS14655 WP_016885544.1 2873200..2873979(+) (comC) [Bacillus licheniformis strain CP13]
ATGAAATTTGATTCTGCGAGGTTGATAACGATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTT
TAATTCGGCCGGGCGCCGCATTTCTGAAAAGATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGC
TGGGCTTCTCGGAGCTGATACCGGTTTTGTCCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCG
ATCGTGTATCCGGCAGTTGAGCTCTCCGCCGCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCT
GGTGATTGTGCTTGCTCTTATATCTCTGCTTTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTG
TTCTTTGTTTTTTCCTGCCTGTCTTTGCCGTCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGT
GCGATGGCCGGCGGTATGCTGCCCCTCTTGACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTT
TGCGGTAATCGGCATGGCGCTCGGCAGCCGCCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTG
GTCTTATTGCACTCCTGGCAGGCAAACTGAAGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTG
ACGAGCTGCTTCTATGGCGAACCAATGATCGAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-100)

Type IV leader peptidase family (Peptidase_A24)

(112-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

47.934

93.436

0.448