Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   V5G23_RS11380 Genome accession   NZ_CP144925
Coordinates   2264797..2267127 (+) Length   776 a.a.
NCBI ID   WP_017474581.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2259797..2272127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS11350 (V5G23_11350) - 2261572..2262267 (+) 696 WP_003185213.1 DsbA family protein -
  V5G23_RS11355 (V5G23_11355) - 2262257..2262670 (+) 414 WP_003185211.1 disulfide oxidoreductase -
  V5G23_RS11360 (V5G23_11360) - 2262777..2263262 (+) 486 WP_075218399.1 GNAT family N-acetyltransferase -
  V5G23_RS11365 (V5G23_11365) - 2263401..2263628 (-) 228 Protein_2192 GrpB family protein -
  V5G23_RS11370 (V5G23_11370) - 2263535..2263885 (-) 351 WP_003185207.1 GrpB family protein -
  V5G23_RS11375 (V5G23_11375) - 2264010..2264618 (+) 609 WP_003185205.1 trimeric intracellular cation channel family protein -
  V5G23_RS11380 (V5G23_11380) helD 2264797..2267127 (+) 2331 WP_017474581.1 RNA polymerase recycling motor HelD Machinery gene
  V5G23_RS11385 (V5G23_11385) - 2267133..2267543 (-) 411 WP_009329578.1 DUF5412 domain-containing protein -
  V5G23_RS11390 (V5G23_11390) - 2267623..2268747 (-) 1125 WP_009329577.1 aminotransferase class V-fold PLP-dependent enzyme -
  V5G23_RS11395 (V5G23_11395) - 2269013..2269873 (+) 861 WP_003185197.1 ROK family protein -
  V5G23_RS11400 (V5G23_11400) - 2269963..2270802 (+) 840 WP_003185195.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 89956.75 Da        Isoelectric Point: 6.9676

>NTDB_id=848138 V5G23_RS11380 WP_017474581.1 2264797..2267127(+) (helD) [Bacillus licheniformis strain CP13]
MQENGQEWLEEEKRIRLVLKELDQKLHSLKGKTGGLKEDIIDLRKHFWSDVTVNIADENEAVETFFSIKQQAEVLAERER
SHKQFYSQLKNLLKVKESPYFGRVDFLEDGEENAESVYIGLASLMYEKEERFLIYDWRAPISSLFYNYGPGAAQYEVPDE
TVRGTIELKRQFLFKNGQLKAMFNTDMAIGDEVLQEVLGQQADIQMKSIVATIQKEQNQIIRNEKSRFLIVRGAAGSGKT
SAALQRAAYLLYRGRGQIESSQMLLFSPNLLFNSYVANVLPELGEENIQQTTFQEFVARRLGKQVPCETPFDQLEYCLTA
SDGEEQRIRMKSIELKSSLAFKGIIDDYVKYLAKGHLVFKHITFRGKRIITSGQMRKFFAALDHSDTLSNRIEQTGKWLL
QLLNKYERQERKKDWVIEESELLDKEEYLKAYKRLQEEQRFTENTFDDYERERNLLASIVAEREFKPLKQAVKAFGFIDF
KGTYLQLFSGRYTPQTRPDDWQSICTFTQKSFRFEKLLYEDAVPFLYMKNKLKGGGKNTAIRHLFIDEAQDYTPFQLAFL
ESLFPACSITMLGDLNQAILAHAYHDKTLLSGGVFEGEKTEIITLKRSYRSTKEIVELTKRIIEGGEEIEAFNRNGKKPT
LTISADPHAHHKEMASLMTALQKEGLETIAVICKTVRECRDAFQHLQQHAELKLIDKETRTFQKGVVVIPVYLAKGIEFD
AVIIYDASEKQYKKERERTLFYTACTRAMHELHLFSIGKETHFLNGVPNDMYTRRE

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=848138 V5G23_RS11380 WP_017474581.1 2264797..2267127(+) (helD) [Bacillus licheniformis strain CP13]
GTGCAGGAAAACGGTCAGGAATGGCTGGAAGAGGAAAAACGAATCCGGCTTGTTTTAAAGGAATTGGATCAAAAGCTTCA
TTCTCTAAAGGGAAAAACCGGCGGATTGAAGGAGGATATCATCGATTTACGGAAACATTTTTGGAGCGATGTCACCGTAA
ACATAGCCGATGAAAATGAAGCGGTTGAAACATTTTTTAGCATTAAACAGCAGGCTGAGGTTTTGGCTGAGAGGGAAAGG
AGCCATAAGCAGTTTTACAGCCAGCTGAAAAACCTGTTAAAAGTGAAAGAATCGCCTTATTTCGGCCGCGTAGATTTTTT
GGAGGACGGCGAAGAAAACGCTGAGTCCGTCTACATCGGACTCGCCTCTTTAATGTATGAAAAAGAAGAGCGGTTTTTGA
TCTATGATTGGAGAGCGCCGATTTCCAGTCTGTTCTATAACTATGGACCCGGCGCGGCTCAATACGAAGTTCCGGACGAG
ACGGTCAGGGGAACGATTGAGCTGAAAAGGCAATTTCTCTTCAAAAACGGACAGCTGAAAGCGATGTTTAATACGGATAT
GGCGATTGGGGATGAAGTCCTTCAGGAAGTGCTGGGGCAGCAGGCCGATATCCAGATGAAAAGCATCGTCGCGACGATTC
AAAAAGAACAGAATCAGATCATTCGGAACGAAAAGAGCCGCTTTTTAATTGTTCGGGGAGCGGCTGGCAGCGGAAAAACG
TCGGCGGCATTGCAGCGGGCCGCATATTTGCTGTACCGCGGCCGCGGGCAGATCGAGTCGAGCCAGATGCTGCTATTCTC
TCCAAACCTGCTTTTTAACAGCTATGTCGCCAATGTTCTGCCTGAGCTCGGAGAGGAAAACATCCAGCAGACGACGTTCC
AGGAATTTGTAGCGCGCCGCCTTGGAAAGCAGGTACCATGCGAGACTCCGTTCGATCAGCTTGAATATTGTTTAACCGCT
TCAGACGGTGAGGAGCAGCGCATCCGGATGAAATCGATTGAATTGAAATCCAGTCTGGCTTTCAAAGGCATCATCGATGA
TTACGTCAAATATTTGGCAAAAGGGCACCTGGTGTTTAAACATATCACCTTTCGCGGAAAAAGGATCATCACAAGCGGTC
AGATGCGGAAATTTTTCGCGGCCCTTGATCATTCAGACACGCTGTCCAACCGGATTGAACAAACGGGAAAATGGCTGTTG
CAGCTCCTGAATAAATATGAACGCCAGGAAAGAAAAAAAGACTGGGTCATCGAAGAAAGCGAGCTGCTGGATAAAGAGGA
ATACTTAAAGGCTTATAAACGTCTTCAGGAGGAACAGCGCTTTACGGAGAATACGTTTGACGATTATGAAAGGGAGCGAA
ACCTCCTTGCCTCCATCGTTGCCGAAAGGGAGTTCAAGCCGCTCAAGCAAGCGGTAAAAGCGTTCGGCTTTATTGATTTT
AAAGGAACATACCTTCAGCTTTTTTCCGGACGCTATACCCCGCAAACGCGCCCTGATGACTGGCAGAGCATTTGCACATT
CACTCAGAAAAGCTTTCGTTTTGAGAAGCTGCTTTATGAAGATGCCGTCCCTTTTTTATATATGAAAAACAAGCTGAAAG
GCGGGGGGAAAAACACGGCAATCCGCCATTTATTCATTGATGAAGCCCAGGATTACACGCCTTTTCAACTTGCTTTTTTG
GAGAGCTTGTTTCCCGCGTGCAGCATCACGATGCTGGGAGACTTAAACCAGGCGATTCTTGCCCATGCCTATCACGATAA
GACGCTTCTGTCGGGAGGCGTGTTTGAAGGCGAAAAAACGGAGATCATCACCTTGAAGCGCAGCTACAGGTCGACGAAAG
AAATTGTTGAATTGACAAAGCGCATCATCGAAGGGGGCGAAGAGATCGAAGCTTTTAACAGGAACGGCAAAAAACCGACT
TTGACAATATCAGCCGATCCTCATGCACACCATAAAGAGATGGCTTCCCTTATGACCGCCCTTCAAAAAGAAGGACTTGA
GACGATTGCAGTCATCTGTAAAACAGTCCGGGAATGCAGGGATGCGTTCCAGCATCTTCAGCAGCATGCAGAGCTTAAAC
TGATCGATAAAGAAACGAGAACGTTTCAAAAAGGCGTGGTCGTCATTCCCGTCTATTTGGCGAAAGGGATCGAATTTGAT
GCCGTCATCATTTATGACGCTTCTGAAAAGCAATACAAAAAGGAAAGAGAGCGGACTTTATTTTATACGGCGTGCACGAG
GGCGATGCATGAGCTGCACCTCTTTTCCATTGGAAAAGAAACGCATTTTTTAAACGGCGTCCCAAATGATATGTACACGA
GAAGAGAGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(706-754)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

56.477

99.485

0.562