Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QUC27_RS24505 Genome accession   NZ_CP128507
Coordinates   5261852..5262409 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WS27-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5256852..5267409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC27_RS24485 (QUC27_24485) pilR 5258128..5259465 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  QUC27_RS24490 (QUC27_24490) thiO 5259511..5260605 (-) 1095 WP_121295630.1 glycine oxidase ThiO -
  QUC27_RS24495 (QUC27_24495) - 5260740..5261249 (+) 510 WP_034053336.1 Tfp pilus assembly protein FimT/FimU -
  QUC27_RS24500 (QUC27_24500) - 5261355..5261861 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QUC27_RS24505 (QUC27_24505) pilV 5261852..5262409 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QUC27_RS24510 (QUC27_24510) pilW 5262406..5263230 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QUC27_RS24515 (QUC27_24515) pilX 5263227..5263814 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  QUC27_RS24520 (QUC27_24520) pilY1 5263826..5267311 (+) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=848134 QUC27_RS24505 WP_003119423.1 5261852..5262409(+) (pilV) [Pseudomonas aeruginosa strain WS27-3]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=848134 QUC27_RS24505 WP_003119423.1 5261852..5262409(+) (pilV) [Pseudomonas aeruginosa strain WS27-3]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995