Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   V5G23_RS07210 Genome accession   NZ_CP144925
Coordinates   1415220..1415450 (-) Length   76 a.a.
NCBI ID   WP_003178210.1    Uniprot ID   A0A6I1MI94
Organism   Bacillus licheniformis strain CP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1410220..1420450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS07200 (V5G23_07200) spoVT 1410948..1411484 (-) 537 WP_003178213.1 stage V sporulation protein T -
  V5G23_RS07205 (V5G23_07205) mfd 1411622..1415155 (-) 3534 WP_011197468.1 transcription-repair coupling factor -
  V5G23_RS07210 (V5G23_07210) subA/fin 1415220..1415450 (-) 231 WP_003178210.1 anti-sigma-F factor Fin family protein Machinery gene
  V5G23_RS07215 (V5G23_07215) pth 1415507..1416073 (-) 567 WP_003178208.1 aminoacyl-tRNA hydrolase -
  V5G23_RS07220 (V5G23_07220) - 1416190..1416816 (-) 627 WP_003178205.1 50S ribosomal protein L25/general stress protein Ctc -
  V5G23_RS07225 (V5G23_07225) - 1416897..1417847 (-) 951 WP_003178203.1 ribose-phosphate diphosphokinase -
  V5G23_RS07230 (V5G23_07230) glmU 1417868..1419238 (-) 1371 WP_003178200.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  V5G23_RS07235 (V5G23_07235) spoVG 1419543..1419836 (-) 294 WP_003178198.1 septation regulator SpoVG -
  V5G23_RS07240 (V5G23_07240) ridA 1420016..1420393 (-) 378 WP_003178196.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8950.85 Da        Isoelectric Point: 5.3733

>NTDB_id=848111 V5G23_RS07210 WP_003178210.1 1415220..1415450(-) (subA/fin) [Bacillus licheniformis strain CP13]
MALHYYCRHCGVKVGSLDHSYVNSEQLGFNHLTNDERNDMISYMDNGDLHVKTICEDCQEALERNPDYHQYHSFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=848111 V5G23_RS07210 WP_003178210.1 1415220..1415450(-) (subA/fin) [Bacillus licheniformis strain CP13]
ATGGCTTTACATTATTATTGCCGGCATTGCGGCGTTAAAGTCGGAAGTCTTGACCATTCTTATGTAAACAGTGAACAGTT
AGGCTTTAACCACTTAACAAATGATGAAAGAAACGATATGATTTCTTATATGGATAATGGGGATTTACACGTGAAGACGA
TATGTGAAGATTGTCAAGAAGCGCTTGAGCGAAACCCGGATTATCACCAATATCATTCATTTATTCAATAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MI94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

77.632

100

0.776