Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QUC24_RS24115 Genome accession   NZ_CP128506
Coordinates   5209385..5209942 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Fe11-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5204385..5214942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC24_RS24095 (QUC24_24095) pilR 5205661..5206998 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  QUC24_RS24100 (QUC24_24100) thiO 5207044..5208138 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  QUC24_RS24105 (QUC24_24105) - 5208273..5208782 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  QUC24_RS24110 (QUC24_24110) - 5208888..5209394 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QUC24_RS24115 (QUC24_24115) pilV 5209385..5209942 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QUC24_RS24120 (QUC24_24120) pilW 5209939..5210763 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QUC24_RS24125 (QUC24_24125) pilX 5210760..5211347 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QUC24_RS24130 (QUC24_24130) pilY1 5211359..5214850 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=848100 QUC24_RS24115 WP_003119423.1 5209385..5209942(+) (pilV) [Pseudomonas aeruginosa strain Fe11-1]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=848100 QUC24_RS24115 WP_003119423.1 5209385..5209942(+) (pilV) [Pseudomonas aeruginosa strain Fe11-1]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995