Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V5G23_RS03420 Genome accession   NZ_CP144925
Coordinates   655442..656158 (-) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain CP13     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 650442..661158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS03405 (V5G23_03405) - 651238..652971 (-) 1734 WP_080618597.1 NTTRR-F1 domain -
  V5G23_RS03410 (V5G23_03410) - 653191..654516 (-) 1326 WP_075218302.1 NTTRR-F1 domain -
  V5G23_RS03415 (V5G23_03415) - 654643..655335 (-) 693 WP_075218303.1 N-acetyltransferase -
  V5G23_RS03420 (V5G23_03420) treR 655442..656158 (-) 717 WP_009329065.1 trehalose operon repressor Regulator
  V5G23_RS03425 (V5G23_03425) treC 656180..657868 (-) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  V5G23_RS03430 (V5G23_03430) treP 657942..659354 (-) 1413 WP_069500302.1 PTS system trehalose-specific EIIBC component -
  V5G23_RS03435 (V5G23_03435) - 659535..660242 (-) 708 Protein_665 alanine:cation symporter family protein -
  V5G23_RS03440 (V5G23_03440) - 660304..660690 (-) 387 WP_003179739.1 DUF1992 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=848097 V5G23_RS03420 WP_009329065.1 655442..656158(-) (treR) [Bacillus licheniformis strain CP13]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=848097 V5G23_RS03420 WP_009329065.1 655442..656158(-) (treR) [Bacillus licheniformis strain CP13]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412