Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   V5G23_RS01980 Genome accession   NZ_CP144925
Coordinates   383217..383957 (-) Length   246 a.a.
NCBI ID   WP_020450802.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 378217..388957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS01960 (V5G23_01960) - 378530..379906 (+) 1377 WP_023856561.1 membrane protein -
  V5G23_RS01965 (V5G23_01965) - 380048..381208 (+) 1161 WP_164504584.1 M20 family metallopeptidase -
  V5G23_RS01970 (V5G23_01970) - 381239..381949 (-) 711 WP_023856559.1 EcsC family protein -
  V5G23_RS01975 (V5G23_01975) - 381998..383224 (-) 1227 WP_020450803.1 ABC transporter permease -
  V5G23_RS01980 (V5G23_01980) pptA 383217..383957 (-) 741 WP_020450802.1 ABC transporter ATP-binding protein Regulator
  V5G23_RS01985 (V5G23_01985) - 384482..384901 (+) 420 WP_020450801.1 HIT family protein -
  V5G23_RS01990 (V5G23_01990) serC 385100..386173 (+) 1074 WP_075218344.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  V5G23_RS01995 (V5G23_01995) - 386316..386843 (+) 528 WP_003180260.1 tryptophan transporter -
  V5G23_RS02000 (V5G23_02000) - 386934..387125 (-) 192 WP_003180258.1 hypothetical protein -
  V5G23_RS02005 (V5G23_02005) - 387287..387643 (+) 357 WP_003180256.1 YtxH domain-containing protein -
  V5G23_RS02010 (V5G23_02010) - 387837..388457 (+) 621 WP_003180254.1 HTH-type transcriptional regulator Hpr -
  V5G23_RS02015 (V5G23_02015) - 388454..388801 (-) 348 WP_003180252.1 YhaI family protein -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 28069.46 Da        Isoelectric Point: 4.8782

>NTDB_id=848088 V5G23_RS01980 WP_020450802.1 383217..383957(-) (pptA) [Bacillus licheniformis strain CP13]
MSLLTVNELTGGYTRNPVLRDVSFAIEREQIVGLIGLNGAGKSTTIRHIIGLMEPHKGSVELNGKTFMDDPESYRSQFTF
IPETPILYEELTLKEHLELTAMAYGLSKETFEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLVEPDLYIIDE
PFLGLDPLAINALLERMNEAKKNGAAVLMSTHILATAERYCDSFIILHNGEVRAKGTLDELREQFSMEEASLDDLYLELT
KEESYE

Nucleotide


Download         Length: 741 bp        

>NTDB_id=848088 V5G23_RS01980 WP_020450802.1 383217..383957(-) (pptA) [Bacillus licheniformis strain CP13]
ATGTCACTACTGACTGTTAATGAGTTAACTGGAGGGTATACAAGAAACCCGGTGCTGCGCGATGTTTCATTTGCGATTGA
ACGGGAGCAGATCGTCGGGCTGATCGGTTTGAACGGAGCGGGGAAAAGCACGACGATCCGGCATATCATCGGCTTAATGG
AACCGCACAAAGGATCGGTTGAATTGAACGGCAAAACGTTCATGGACGATCCGGAAAGCTATCGTTCCCAATTTACGTTT
ATTCCGGAAACGCCGATTTTATATGAAGAGCTGACATTGAAGGAGCATTTGGAGCTGACGGCGATGGCGTACGGGCTTTC
GAAGGAAACCTTCGAGAAAAGGCTTCCGCCGCTTTTGAAAGAATTCAGAATGGAGAAGCGCCTGAAATGGTTCCCTGCCC
ATTTTTCAAAAGGTATGAAGCAGAAGGTTATGATCATGTGCGCTTTCCTTGTCGAACCCGACCTGTACATTATAGACGAA
CCGTTTCTCGGTCTTGATCCGCTGGCGATCAATGCCCTTCTCGAGCGGATGAACGAAGCGAAGAAAAACGGAGCGGCGGT
TTTGATGTCGACGCATATTTTGGCAACGGCAGAGCGGTATTGCGACTCCTTCATTATTCTTCATAACGGCGAAGTGCGGG
CGAAAGGAACGCTTGATGAGCTCAGAGAGCAGTTTTCGATGGAAGAAGCGAGCCTCGACGACCTGTATCTTGAACTGACG
AAGGAAGAGAGCTATGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.261

97.967

0.561
  pptA Streptococcus thermophilus LMD-9

56.846

97.967

0.557