Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   V5G23_RS01590 Genome accession   NZ_CP144925
Coordinates   293779..297171 (-) Length   1130 a.a.
NCBI ID   WP_075218352.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 288779..302171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS01540 (V5G23_01540) - 289128..289631 (-) 504 WP_023856614.1 hypothetical protein -
  V5G23_RS01545 (V5G23_01545) - 289797..290882 (+) 1086 WP_025811689.1 CotH kinase family protein -
  V5G23_RS01550 (V5G23_01550) - 291045..291227 (+) 183 WP_020450876.1 aspartyl-phosphate phosphatase Spo0E family protein -
  V5G23_RS01555 (V5G23_01555) - 291310..291603 (-) 294 WP_020450875.1 DUF3784 domain-containing protein -
  V5G23_RS01560 (V5G23_01560) - 291789..292010 (+) 222 WP_020450874.1 spore germination protein -
  V5G23_RS01565 (V5G23_01565) - 292023..292268 (+) 246 WP_020450873.1 spore germination protein GerPB -
  V5G23_RS01570 (V5G23_01570) - 292287..292901 (+) 615 WP_026579927.1 spore germination protein GerPC -
  V5G23_RS01575 (V5G23_01575) - 292898..293080 (+) 183 WP_003180439.1 hypothetical protein -
  V5G23_RS01580 (V5G23_01580) - 293077..293460 (+) 384 WP_003180437.1 spore germination protein GerPE -
  V5G23_RS01585 (V5G23_01585) - 293516..293734 (+) 219 WP_009328895.1 spore germination protein -
  V5G23_RS01590 (V5G23_01590) sbcC 293779..297171 (-) 3393 WP_075218352.1 exonuclease subunit SbcC Machinery gene
  V5G23_RS01595 (V5G23_01595) sbcD 297168..298349 (-) 1182 WP_073426309.1 exonuclease subunit SbcD -
  V5G23_RS01600 (V5G23_01600) addA 298414..302106 (-) 3693 WP_011197743.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 129032.88 Da        Isoelectric Point: 5.6224

>NTDB_id=848081 V5G23_RS01590 WP_075218352.1 293779..297171(-) (sbcC) [Bacillus licheniformis strain CP13]
MKPISLSIKGLHSFRQEQVIDFERLCDAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDELAVSFTF
KLQTGHETAYKVERVFKRTDAVKVKTSICRFIEMKEEQIVLADKANEVNRKIEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRQMLQRLFNLEQYGDRLVKKLKKQAQTAQSRKNEMLAEQAGLGDAGEEALKLAEQHLEEAETLLQSKRRERDAEA
QRFAEYQEIWNLQQEKESYLKKEAELLKKKEQIREKESRLHLAETANTLKPYADAFLAAREDAERALREEKQAREQLEQY
EELHKKTECEYENFRRHKNEKEPELLKQEEQLTALKEIENKRLAAQAEAEKKQREQRLKEEEIKHAADELAKVKSLLERG
TAKQNQLKAELKSVQVSSEERKNCRKANQLAFHIQQLNSDAALEKKRLDQQEALIKELRQEQQAVDQKVKDETERIQALF
AAVERAYALVCETDRSLSETVRLATQKKEEIVAKREQANRDQLAIELAKQLKEGEPCPVCGSVHHEMPAGVGTESPSFKE
TESELEKTEAIIAEAGALAQEFLSAKVALEQQSGHLMSECPFLVKSKHELPETAASIEEGTIPERYNRISFEWKGIRQDL
AETKSRMSKLLHTYKELCKKRDQISERLSHEEKERNRLQNRVGELNDQLNERRKSFGEQFDGLSYEQAEKWQKTIEEKDL
AAEEFEKRIETSVGFLTKHEQQKEKLTERLFALDKEKLDLRYAVESLNKEINDYQKELMGYPDTAAIDKKLQDVKTQLAK
LHEQEQTLYGRLKETESEVSRLRGQTKGCELALREAEARLAKAADIWQEKSGGTPFEKASEVKASILDRDDLARLKEDIQ
MHWDQTKQCESNIKRITEKLDGRSVSEESWEKAAVTKDKAEEAFSKALEERGAAGKALAVIRENHKRFKELEASLAEWQT
YIDRLDKLQAVFKGNSFVEYLAEEQLESVTRDASARLGELTRQRYAIEVDSEGGFVMRDDANGGVKRPVTSLSGGETFLT
SLALALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPAEPSG
KGTAVSLEMI

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=848081 V5G23_RS01590 WP_075218352.1 293779..297171(-) (sbcC) [Bacillus licheniformis strain CP13]
ATGAAGCCGATTTCTCTGTCTATTAAGGGCCTGCACAGTTTCAGGCAGGAGCAGGTGATCGATTTTGAGCGCCTGTGCGA
TGCCGGTGTATTCGGCATCTTCGGGCCGACCGGAAGCGGCAAGTCGTCGATTCTTGATGCGATGACTCTTGCTTTGTACG
GGAAAGTGGAGCGGGCCGCCAATAATACGCACGGCATTTTGAACCATGCCGAAGATGAGCTTGCCGTATCGTTTACGTTT
AAGCTGCAGACAGGCCATGAGACGGCTTATAAAGTGGAACGGGTCTTTAAGCGGACAGACGCCGTCAAGGTCAAAACGTC
GATATGCCGCTTTATTGAAATGAAAGAGGAACAAATCGTCCTGGCCGATAAAGCGAATGAAGTAAACCGAAAAATCGAAG
AGCTGCTGGGCTTGACGATCGACGATTTTACAAGGGCAGTCGTCCTGCCGCAAGGAAAATTCGCCGAATTTCTTTCCTTG
AAAGGAGCGGAGCGAAGGCAGATGCTTCAGCGCCTGTTCAACCTTGAACAATACGGGGACAGGCTCGTCAAAAAACTAAA
GAAACAGGCGCAAACAGCTCAGTCCAGAAAAAACGAGATGCTTGCCGAGCAGGCTGGATTGGGCGATGCGGGGGAAGAGG
CGCTGAAGCTGGCGGAACAGCATCTCGAAGAAGCCGAAACCCTTTTGCAAAGCAAGAGGCGCGAACGAGATGCGGAAGCG
CAGCGCTTTGCGGAGTACCAGGAAATTTGGAATCTGCAGCAAGAAAAAGAAAGCTATCTAAAAAAAGAGGCGGAGCTTTT
AAAGAAAAAGGAACAGATCCGGGAAAAAGAAAGCCGCCTGCATCTCGCTGAAACGGCAAATACGCTCAAGCCTTATGCAG
ACGCCTTTCTGGCAGCGCGGGAAGATGCCGAGCGCGCACTTCGGGAAGAAAAACAAGCGCGGGAACAATTAGAACAATAC
GAAGAGCTTCATAAAAAAACAGAGTGCGAGTACGAGAATTTCAGGCGTCATAAAAATGAAAAAGAACCGGAGCTTCTCAA
GCAAGAAGAACAGCTCACCGCTTTGAAGGAAATTGAAAACAAGCGGCTTGCCGCACAGGCAGAAGCTGAGAAAAAGCAGC
GGGAACAGCGCTTGAAAGAAGAGGAAATCAAGCATGCGGCAGACGAACTGGCCAAGGTGAAAAGCCTGCTTGAACGCGGG
ACAGCCAAGCAAAATCAGCTGAAAGCGGAGCTGAAATCTGTCCAGGTATCCAGCGAAGAGCGCAAAAACTGCCGGAAGGC
CAATCAGCTTGCTTTTCACATTCAGCAGCTTAACAGCGATGCCGCTTTAGAAAAAAAACGGCTCGATCAGCAGGAGGCGC
TGATCAAAGAGCTCCGGCAAGAACAGCAAGCGGTGGATCAGAAGGTGAAGGATGAAACCGAACGCATCCAGGCATTGTTT
GCCGCTGTCGAACGAGCGTATGCGCTCGTTTGCGAAACGGACAGATCGCTCTCTGAGACCGTCCGTCTCGCGACTCAAAA
GAAAGAAGAGATTGTCGCAAAACGGGAACAGGCAAACCGTGATCAGCTGGCAATCGAACTGGCAAAGCAGCTCAAAGAGG
GTGAGCCTTGTCCGGTCTGCGGGTCTGTACATCATGAAATGCCCGCGGGTGTCGGTACGGAAAGCCCGTCCTTTAAAGAG
ACGGAATCCGAACTGGAGAAAACGGAAGCCATCATCGCAGAAGCCGGCGCGCTGGCTCAGGAGTTTCTCTCAGCCAAAGT
GGCGCTCGAACAGCAGTCCGGCCACCTGATGAGCGAATGCCCGTTTTTAGTCAAGAGCAAACATGAACTGCCTGAAACCG
CTGCATCGATAGAAGAAGGCACCATTCCCGAACGGTACAACCGCATCAGCTTTGAATGGAAAGGAATCAGACAGGATCTC
GCAGAGACAAAAAGCAGGATGTCCAAGCTCCTTCACACATATAAAGAGCTCTGCAAGAAACGCGACCAAATCAGCGAGCG
ACTCAGCCATGAAGAAAAGGAGCGTAACAGGCTTCAAAACCGCGTCGGCGAATTAAATGACCAGTTAAATGAACGCCGAA
AAAGCTTCGGCGAACAATTCGACGGCCTCTCTTATGAACAGGCTGAAAAATGGCAAAAAACGATTGAAGAAAAAGATCTG
GCCGCAGAGGAATTCGAAAAGCGTATCGAAACGAGCGTCGGCTTTCTCACAAAACATGAACAGCAAAAAGAGAAGCTCAC
CGAGCGCTTGTTTGCGCTTGATAAAGAAAAGCTCGACCTCCGCTATGCTGTCGAAAGCCTTAATAAAGAAATAAACGATT
ATCAAAAAGAGCTGATGGGCTATCCCGATACAGCTGCAATCGACAAAAAGCTTCAAGACGTGAAAACGCAATTGGCCAAG
CTGCATGAGCAGGAACAGACGCTTTACGGACGGCTCAAGGAGACCGAATCCGAAGTCAGCCGTTTAAGAGGACAGACAAA
AGGGTGTGAGCTCGCTTTGCGTGAAGCGGAAGCAAGGCTTGCGAAAGCGGCGGACATCTGGCAGGAAAAATCCGGAGGTA
CACCGTTTGAAAAGGCCTCTGAAGTGAAAGCGAGCATTTTAGACCGCGATGATCTTGCCCGGCTGAAAGAAGACATTCAA
ATGCATTGGGATCAGACAAAACAGTGCGAGTCCAATATCAAGCGGATTACGGAAAAGCTTGATGGGAGATCGGTTTCTGA
GGAGAGTTGGGAAAAAGCCGCCGTCACGAAGGACAAAGCTGAGGAGGCATTCAGCAAAGCCTTGGAAGAAAGGGGCGCGG
CCGGCAAAGCTCTCGCCGTCATCCGCGAGAACCATAAAAGGTTTAAGGAACTTGAAGCATCATTGGCTGAATGGCAGACA
TACATCGACCGTCTTGATAAACTCCAAGCCGTCTTTAAAGGAAACAGCTTTGTTGAATACTTGGCAGAAGAGCAGCTTGA
AAGCGTCACAAGAGACGCATCTGCAAGACTCGGCGAACTGACAAGACAGAGGTATGCGATTGAAGTCGACTCAGAAGGCG
GTTTTGTGATGAGGGACGATGCCAACGGCGGAGTCAAGCGCCCTGTTACGAGTCTGTCAGGTGGGGAGACGTTTCTGACT
TCACTGGCGCTTGCGCTTGCACTTTCGGCACAGATCCAGCTTCGCGGAGAGTATCCGCTCCAATTCTTCTTTTTGGACGA
AGGGTTTGGCACGCTTGATCAGGATTTGCTGGATACGGTCGTGACCGCATTGGAGAAGCTTCAGTCTGACAATCTGTCGG
TCGGTGTGATCAGCCACGTTCAGGAACTTCGGGCCAGGCTGCCGAAGAAGCTGATTGTCCATCCGGCTGAACCGAGCGGC
AAAGGCACAGCTGTATCGCTTGAAATGATTTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(5-280)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

56.283

100

0.563