Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QTN49_RS18190 Genome accession   NZ_CP128504
Coordinates   3667348..3667785 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123434     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3662348..3672785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN49_RS18175 (QTN49_18175) - 3665234..3665596 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  QTN49_RS18180 (QTN49_18180) hxlA 3665828..3666463 (+) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  QTN49_RS18185 (QTN49_18185) hxlB 3666460..3667017 (+) 558 WP_065180943.1 6-phospho-3-hexuloisomerase -
  QTN49_RS18190 (QTN49_18190) nucA/comI 3667348..3667785 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QTN49_RS18195 (QTN49_18195) nin/comJ 3667806..3668204 (+) 399 WP_017419379.1 competence protein ComJ Regulator
  QTN49_RS18200 (QTN49_18200) - 3668223..3668453 (-) 231 Protein_3572 family 1 glycosylhydrolase -
  QTN49_RS18205 (QTN49_18205) - 3668673..3668996 (-) 324 WP_007409357.1 YckD family protein -
  QTN49_RS18210 (QTN49_18210) - 3669068..3669502 (-) 435 WP_014416871.1 RDD family protein -
  QTN49_RS18215 (QTN49_18215) - 3669517..3670653 (-) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  QTN49_RS18220 (QTN49_18220) - 3670718..3671920 (-) 1203 WP_014416870.1 GTP-binding protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=848033 QTN49_RS18190 WP_003156588.1 3667348..3667785(+) (nucA/comI) [Bacillus velezensis strain SRCM123434]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=848033 QTN49_RS18190 WP_003156588.1 3667348..3667785(+) (nucA/comI) [Bacillus velezensis strain SRCM123434]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641