Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V5G22_RS15230 Genome accession   NZ_CP144920
Coordinates   2999307..3000125 (-) Length   272 a.a.
NCBI ID   WP_016885504.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP26     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2994307..3005125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G22_RS15210 (V5G22_15210) - 2994565..2995572 (-) 1008 Protein_2935 helix-turn-helix domain-containing protein -
  V5G22_RS15215 (V5G22_15215) - 2995886..2997241 (-) 1356 WP_016885506.1 MATE family efflux transporter -
  V5G22_RS15220 (V5G22_15220) - 2997298..2998134 (-) 837 WP_003183808.1 MerR family transcriptional regulator -
  V5G22_RS15225 (V5G22_15225) nikE 2998447..2999265 (-) 819 WP_025805007.1 nickel import ATP-binding protein NikE -
  V5G22_RS15230 (V5G22_15230) amiE 2999307..3000125 (-) 819 WP_016885504.1 nickel import ATP-binding protein NikD Regulator
  V5G22_RS15235 (V5G22_15235) nikC 3000141..3000974 (-) 834 WP_016885503.1 nickel ABC transporter permease subunit NikC -
  V5G22_RS15240 (V5G22_15240) nikB 3000971..3001915 (-) 945 WP_145679193.1 nickel ABC transporter permease subunit NikB -
  V5G22_RS15245 (V5G22_15245) nikA 3001925..3003547 (-) 1623 WP_016885502.1 nickel ABC transporter substrate-binding protein -
  V5G22_RS15250 (V5G22_15250) - 3003837..3004886 (+) 1050 WP_003183797.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 30131.87 Da        Isoelectric Point: 8.4839

>NTDB_id=848017 V5G22_RS15230 WP_016885504.1 2999307..3000125(-) (amiE) [Bacillus licheniformis strain CP26]
MGTEQSTVLRVRDLHVQVNNQKGHSTLVQDINFDLKRGQVLGLIGESGCGKTVTSISILQTLDPKTTKVEGSIALRGREL
NGLADKEMRKIRGKDIAYIMQNPMNAFTPVFTIGQQMTESIRSHTSFSKKQAKELATEALHHVNLPHPAKLLHSYPFQLS
GGMLQRVMIAIASCLKPAILIADEPTTALDVYNQKTVLKYLDGMRSDFGTAILLISHDLGVIAEMADEVAVMQNGRIVEN
RDVFQLFDEPKHEYTKKLLSARLTLPVDQLAT

Nucleotide


Download         Length: 819 bp        

>NTDB_id=848017 V5G22_RS15230 WP_016885504.1 2999307..3000125(-) (amiE) [Bacillus licheniformis strain CP26]
TTGGGAACAGAACAATCAACGGTGCTTCGAGTCAGAGATTTGCATGTACAGGTTAACAACCAAAAAGGACATTCAACCCT
TGTGCAAGACATCAATTTTGATTTGAAGCGCGGCCAAGTCCTTGGTCTGATTGGTGAGAGCGGTTGCGGAAAAACGGTAA
CAAGCATTTCTATTCTTCAGACGCTTGATCCAAAAACAACTAAGGTGGAAGGAAGTATTGCATTGCGAGGCCGTGAATTG
AACGGATTAGCAGATAAGGAAATGCGTAAAATCCGCGGCAAAGATATTGCCTATATCATGCAAAATCCGATGAACGCTTT
TACACCCGTTTTTACGATAGGACAGCAAATGACCGAATCGATTCGCTCTCATACATCTTTTAGCAAGAAACAGGCGAAAG
AGCTTGCGACCGAAGCATTGCATCATGTTAACCTACCCCACCCTGCTAAACTTTTACATTCTTATCCTTTTCAATTAAGC
GGCGGAATGCTTCAACGGGTCATGATTGCAATTGCATCATGCTTAAAGCCTGCCATTCTCATCGCGGATGAGCCTACCAC
TGCGCTCGACGTGTATAATCAGAAGACGGTGCTGAAATATTTAGACGGCATGCGTTCTGACTTCGGCACGGCGATTTTGC
TTATATCTCATGACCTCGGCGTTATTGCTGAAATGGCGGATGAAGTTGCTGTGATGCAGAATGGGAGAATTGTAGAAAAT
AGAGATGTGTTTCAGCTGTTTGATGAACCAAAGCATGAATATACTAAGAAGCTATTAAGTGCACGGTTGACATTGCCGGT
GGATCAACTTGCGACTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(29-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

40.37

99.265

0.401
  oppD Streptococcus mutans UA159

40.385

95.588

0.386
  amiE Streptococcus thermophilus LMG 18311

40.076

96.324

0.386
  amiE Streptococcus thermophilus LMD-9

40.076

96.324

0.386