Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QTN49_RS12485 Genome accession   NZ_CP128504
Coordinates   2563218..2563502 (-) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain SRCM123434     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2558218..2568502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN49_RS12465 (QTN49_12465) ade 2558328..2560061 (-) 1734 WP_106067847.1 adenine deaminase -
  QTN49_RS12470 (QTN49_12470) ktrC 2560210..2560875 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  QTN49_RS12475 (QTN49_12475) - 2560916..2561739 (-) 824 Protein_2460 gamma-glutamylcyclotransferase -
  QTN49_RS12480 (QTN49_12480) - 2561741..2563045 (-) 1305 WP_014417634.1 ATP-binding protein -
  QTN49_RS12485 (QTN49_12485) abrB 2563218..2563502 (-) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QTN49_RS12490 (QTN49_12490) mreBH 2563774..2564781 (+) 1008 WP_029575211.1 cell shape-determining protein MreBH -
  QTN49_RS12495 (QTN49_12495) - 2564853..2564987 (+) 135 WP_003154559.1 protein YkpC -
  QTN49_RS12500 (QTN49_12500) - 2565088..2566320 (+) 1233 WP_007409644.1 aminopeptidase -
  QTN49_RS12505 (QTN49_12505) - 2566351..2567259 (-) 909 WP_025649506.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=848009 QTN49_RS12485 WP_014417633.1 2563218..2563502(-) (abrB) [Bacillus velezensis strain SRCM123434]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=848009 QTN49_RS12485 WP_014417633.1 2563218..2563502(-) (abrB) [Bacillus velezensis strain SRCM123434]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543