Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QTN49_RS07660 Genome accession   NZ_CP128504
Coordinates   1490839..1491606 (+) Length   255 a.a.
NCBI ID   WP_063636710.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123434     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1485839..1496606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN49_RS07630 (QTN49_07630) - 1486122..1488254 (+) 2133 WP_065180881.1 HD family phosphohydrolase -
  QTN49_RS07635 (QTN49_07635) ybeY 1488255..1488728 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  QTN49_RS07640 (QTN49_07640) - 1488709..1489083 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  QTN49_RS07645 (QTN49_07645) - 1489207..1489617 (+) 411 WP_017418172.1 cytidine deaminase -
  QTN49_RS07650 (QTN49_07650) era 1489598..1490503 (+) 906 WP_007408285.1 GTPase Era -
  QTN49_RS07655 (QTN49_07655) - 1490659..1490802 (+) 144 WP_007408286.1 YqzL family protein -
  QTN49_RS07660 (QTN49_07660) recO 1490839..1491606 (+) 768 WP_063636710.1 DNA repair protein RecO Machinery gene
  QTN49_RS07665 (QTN49_07665) glyQ 1491908..1492795 (+) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  QTN49_RS07670 (QTN49_07670) glyS 1492788..1494827 (+) 2040 WP_017418170.1 glycine--tRNA ligase subunit beta -
  QTN49_RS07675 (QTN49_07675) ccpN 1494927..1495565 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  QTN49_RS07680 (QTN49_07680) - 1495591..1496403 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29419.08 Da        Isoelectric Point: 8.7972

>NTDB_id=847992 QTN49_RS07660 WP_063636710.1 1490839..1491606(+) (recO) [Bacillus velezensis strain SRCM123434]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSREG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=847992 QTN49_RS07660 WP_063636710.1 1490839..1491606(+) (recO) [Bacillus velezensis strain SRCM123434]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGGCTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894