Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NK8_RS05660 Genome accession   NZ_AP024322
Coordinates   1196350..1197732 (+) Length   460 a.a.
NCBI ID   WP_213227974.1    Uniprot ID   -
Organism   Caballeronia sp. NK8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1191350..1202732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NK8_RS05640 (NK8_11190) thiE 1192162..1192809 (-) 648 WP_213227968.1 thiamine phosphate synthase -
  NK8_RS05645 (NK8_11200) thiM 1192812..1193627 (-) 816 WP_213227970.1 hydroxyethylthiazole kinase -
  NK8_RS05650 (NK8_11210) lplT 1193659..1194966 (-) 1308 WP_162065441.1 lysophospholipid transporter LplT -
  NK8_RS05655 (NK8_11220) alr 1195248..1196318 (+) 1071 WP_213227972.1 alanine racemase -
  NK8_RS05660 (NK8_11230) radA 1196350..1197732 (+) 1383 WP_213227974.1 DNA repair protein RadA Machinery gene
  NK8_RS05665 - 1197895..1198158 (+) 264 WP_213227976.1 DUF2866 domain-containing protein -
  NK8_RS05670 (NK8_11250) - 1198155..1199174 (-) 1020 WP_213227978.1 CaiB/BaiF CoA-transferase family protein -
  NK8_RS05675 (NK8_11260) - 1199190..1201130 (-) 1941 WP_213227980.1 ATP-binding cassette domain-containing protein -
  NK8_RS05680 (NK8_11270) - 1201287..1201778 (+) 492 WP_162065447.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48662.99 Da        Isoelectric Point: 6.9501

>NTDB_id=84799 NK8_RS05660 WP_213227974.1 1196350..1197732(+) (radA) [Caballeronia sp. NK8]
MAKAAKAKTLYTCSECGGQSPKWTGQCAACGAWNTLVETVEQAPSAHRFQALAKSSAVRKLADIEASDVPRFTTGVGEFD
RVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIARERPALYVSGEESGAQIALRAQRLGLIGESAAGDLALLAEIQLEK
IQATIDEQRPEVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRIAKQTGTSIIMVGHVTKEGSLAGPRVLEHIVDTVL
YFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGSRPLLVEVQALVDTA
HVPNPRRLAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLITFGEVG
LAGEIRPSPRGQDRLKEAAKLGFSVALIPKANAPKQAIDGLKVIAVDRIEEAIDRVRDLE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=84799 NK8_RS05660 WP_213227974.1 1196350..1197732(+) (radA) [Caballeronia sp. NK8]
GTGGCAAAAGCAGCGAAGGCAAAGACGCTCTATACGTGTAGCGAATGCGGCGGACAATCGCCGAAATGGACCGGCCAGTG
CGCCGCGTGCGGTGCGTGGAACACGTTGGTGGAAACGGTGGAGCAGGCGCCCTCCGCGCATCGCTTCCAGGCGCTCGCGA
AGAGCTCGGCGGTGCGAAAGCTCGCCGATATCGAGGCGTCGGACGTGCCGCGCTTCACGACCGGCGTCGGCGAATTCGAC
CGCGTGCTGGGCGGCGGCCTCGTGCCCGGTGGCGTCGTGCTGATCGGGGGCGATCCGGGCATCGGCAAGTCGACGCTGCT
GTTGCAATCGCTCGCGGAGATCGCGCGCGAGCGCCCCGCGCTCTATGTGAGCGGCGAGGAATCCGGCGCGCAGATCGCGT
TGCGCGCGCAACGGCTCGGCCTGATCGGGGAAAGCGCGGCGGGCGACCTCGCGCTGCTCGCGGAAATCCAGCTCGAAAAG
ATTCAGGCGACCATCGACGAGCAACGTCCCGAAGTCGCCGTGATCGACTCCATCCAGACCATTTATTCCGAAGCGCTGAC
TTCCGCGCCCGGTTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAACTGACGCGCATCGCGAAGCAGACGGGCACGTCGA
TCATCATGGTCGGCCACGTGACCAAGGAGGGCAGTCTCGCGGGGCCTCGCGTGCTGGAGCATATCGTCGATACCGTGCTG
TATTTCGAGGGCGATACGCATTCGTCGTTCAGACTCGTGCGCGCGTTCAAGAACCGGTTCGGCGCGGTCAACGAACTCGG
CGTCTTCGCGATGACGGAAAAGGGCTTGCGCGGCGTCGCGAATCCGTCGGCGCTGTTTCTGTCGCAGCACGAGCAAAGCG
TGCCGGGTTCGTGCGTGCTCGTGACGCAGGAAGGCTCGCGGCCGCTGCTCGTCGAGGTGCAGGCGCTGGTCGATACCGCG
CATGTGCCCAATCCGCGCCGGCTCGCGGTGGGGCTGGAGCAAAACCGGCTCGCGCTGTTGCTGGCCGTTCTGCACCGGCA
TGCCGGCATCGCGTGTTTCGATCAGGATGTGTTTCTCAACGCGGTCGGCGGCGTGAAGATCACCGAACCGGCGGCGGATC
TGGCCGTGCTGCTCGCGATTCATTCGTCGATGCGCAACAAGCCATTGCCCAAGGGCCTCATCACGTTCGGCGAAGTCGGG
CTGGCGGGCGAAATCCGGCCGTCGCCGCGCGGACAGGACCGCCTGAAGGAAGCGGCCAAGCTCGGCTTTTCGGTCGCGCT
GATTCCGAAGGCGAACGCGCCGAAGCAGGCGATCGACGGCCTGAAGGTGATCGCGGTGGATCGAATCGAGGAAGCGATCG
ACCGGGTTCGGGATCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.433

100

0.507
  radA Streptococcus mitis SK321

47.495

99.783

0.474
  radA Streptococcus pneumoniae D39

47.598

99.565

0.474
  radA Streptococcus pneumoniae TIGR4

47.598

99.565

0.474
  radA Streptococcus pneumoniae R6

47.598

99.565

0.474
  radA Streptococcus pneumoniae Rx1

47.598

99.565

0.474
  radA Streptococcus mitis NCTC 12261

47.38

99.565

0.472

Multiple sequence alignment