Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QTN49_RS06775 Genome accession   NZ_CP128504
Coordinates   1322594..1323346 (+) Length   250 a.a.
NCBI ID   WP_071181911.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123434     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1317594..1328346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN49_RS06760 (QTN49_06760) - 1317816..1318007 (-) 192 WP_003152639.1 hypothetical protein -
  QTN49_RS06765 (QTN49_06765) - 1318460..1321102 (+) 2643 WP_022552877.1 valine--tRNA ligase -
  QTN49_RS06770 (QTN49_06770) - 1321161..1322453 (+) 1293 WP_017418285.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QTN49_RS06775 (QTN49_06775) comC 1322594..1323346 (+) 753 WP_071181911.1 A24 family peptidase Machinery gene
  QTN49_RS06780 (QTN49_06780) - 1323473..1324474 (+) 1002 WP_071181910.1 SPOR domain-containing protein -
  QTN49_RS06785 (QTN49_06785) - 1324615..1325184 (+) 570 WP_071181909.1 Maf family protein -
  QTN49_RS06790 (QTN49_06790) radC 1325216..1325911 (+) 696 WP_007408165.1 DNA repair protein RadC -
  QTN49_RS06795 (QTN49_06795) mreB 1326003..1327016 (+) 1014 WP_106067926.1 cell shape-determining protein MreB -
  QTN49_RS06800 (QTN49_06800) mreC 1327047..1327910 (+) 864 WP_016938781.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27012.64 Da        Isoelectric Point: 9.2521

>NTDB_id=847985 QTN49_RS06775 WP_071181911.1 1322594..1323346(+) (comC) [Bacillus velezensis strain SRCM123434]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=847985 QTN49_RS06775 WP_071181911.1 1322594..1323346(+) (comC) [Bacillus velezensis strain SRCM123434]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTTGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCAGGAGCTGTTTGTGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584