Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QTN48_RS21610 Genome accession   NZ_CP128503
Coordinates   4200441..4200731 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123422     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4195441..4205731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS21595 (QTN48_21595) - 4195659..4196984 (-) 1326 WP_104843579.1 G5 and 3D domain-containing protein -
  QTN48_RS21600 (QTN48_21600) - 4197119..4197886 (-) 768 WP_017419495.1 TatD family hydrolase -
  QTN48_RS21605 (QTN48_21605) metG 4197967..4199958 (-) 1992 WP_025650337.1 methionine--tRNA ligase -
  QTN48_RS21610 (QTN48_21610) abrB 4200441..4200731 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  QTN48_RS21615 (QTN48_21615) rsmI 4200781..4201662 (-) 882 WP_017419497.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QTN48_RS21620 (QTN48_21620) - 4201637..4201936 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  QTN48_RS21625 (QTN48_21625) - 4201923..4202666 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QTN48_RS21630 (QTN48_21630) yabA 4202727..4203086 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  QTN48_RS21635 (QTN48_21635) ricT 4203101..4203928 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  QTN48_RS21640 (QTN48_21640) holB 4203931..4204920 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  QTN48_RS21645 (QTN48_21645) - 4204932..4205372 (-) 441 WP_004264730.1 DUF327 family protein -
  QTN48_RS21650 (QTN48_21650) darA 4205385..4205714 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=847962 QTN48_RS21610 WP_169510469.1 4200441..4200731(+) (abrB) [Bacillus velezensis strain SRCM123422]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=847962 QTN48_RS21610 WP_169510469.1 4200441..4200731(+) (abrB) [Bacillus velezensis strain SRCM123422]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979