Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QTN48_RS13930 Genome accession   NZ_CP128503
Coordinates   2746351..2746635 (-) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain SRCM123422     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2741351..2751635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS13910 (QTN48_13910) ade 2741457..2743190 (-) 1734 WP_063636615.1 adenine deaminase -
  QTN48_RS13915 (QTN48_13915) ktrC 2743339..2744004 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  QTN48_RS13920 (QTN48_13920) - 2744045..2744872 (-) 828 WP_014417635.1 gamma-glutamylcyclotransferase family protein -
  QTN48_RS13925 (QTN48_13925) - 2744874..2746178 (-) 1305 WP_014417634.1 ATP-binding protein -
  QTN48_RS13930 (QTN48_13930) abrB 2746351..2746635 (-) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QTN48_RS13935 (QTN48_13935) mreBH 2746906..2747913 (+) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  QTN48_RS13940 (QTN48_13940) - 2747985..2748119 (+) 135 WP_003154559.1 protein YkpC -
  QTN48_RS13945 (QTN48_13945) - 2748220..2749452 (+) 1233 WP_007409644.1 aminopeptidase -
  QTN48_RS13950 (QTN48_13950) - 2749483..2750391 (-) 909 WP_025649506.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=847933 QTN48_RS13930 WP_014417633.1 2746351..2746635(-) (abrB) [Bacillus velezensis strain SRCM123422]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=847933 QTN48_RS13930 WP_014417633.1 2746351..2746635(-) (abrB) [Bacillus velezensis strain SRCM123422]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543