Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QTN48_RS08255 Genome accession   NZ_CP128503
Coordinates   1568313..1569080 (+) Length   255 a.a.
NCBI ID   WP_017418171.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123422     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1563313..1574080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS08225 (QTN48_08225) - 1563596..1565728 (+) 2133 WP_014418406.1 HD family phosphohydrolase -
  QTN48_RS08230 (QTN48_08230) ybeY 1565729..1566202 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  QTN48_RS08235 (QTN48_08235) - 1566183..1566557 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  QTN48_RS08240 (QTN48_08240) - 1566681..1567091 (+) 411 WP_017418172.1 cytidine deaminase -
  QTN48_RS08245 (QTN48_08245) era 1567072..1567977 (+) 906 WP_014470680.1 GTPase Era -
  QTN48_RS08250 (QTN48_08250) - 1568133..1568276 (+) 144 WP_007408286.1 YqzL family protein -
  QTN48_RS08255 (QTN48_08255) recO 1568313..1569080 (+) 768 WP_017418171.1 DNA repair protein RecO Machinery gene
  QTN48_RS08260 (QTN48_08260) glyQ 1569382..1570269 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  QTN48_RS08265 (QTN48_08265) glyS 1570262..1572301 (+) 2040 WP_106067887.1 glycine--tRNA ligase subunit beta -
  QTN48_RS08270 (QTN48_08270) ccpN 1572401..1573039 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  QTN48_RS08275 (QTN48_08275) - 1573065..1573877 (+) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29319.94 Da        Isoelectric Point: 8.5625

>NTDB_id=847916 QTN48_RS08255 WP_017418171.1 1568313..1569080(+) (recO) [Bacillus velezensis strain SRCM123422]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=847916 QTN48_RS08255 WP_017418171.1 1568313..1569080(+) (recO) [Bacillus velezensis strain SRCM123422]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894