Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QTN46_RS21895 Genome accession   NZ_CP128501
Coordinates   4049317..4049607 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4044317..4054607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS21855 (QTN46_21855) darA 4044334..4044663 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  QTN46_RS21860 (QTN46_21860) - 4044676..4045116 (+) 441 WP_045513461.1 DUF327 family protein -
  QTN46_RS21865 (QTN46_21865) holB 4045128..4046117 (+) 990 WP_289394071.1 DNA polymerase III subunit delta' -
  QTN46_RS21870 (QTN46_21870) ricT 4046120..4046947 (+) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT -
  QTN46_RS21875 (QTN46_21875) yabA 4046962..4047321 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  QTN46_RS21880 (QTN46_21880) - 4047382..4048125 (+) 744 WP_013350749.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QTN46_RS21885 (QTN46_21885) - 4048112..4048411 (+) 300 WP_193351185.1 GIY-YIG nuclease family protein -
  QTN46_RS21890 (QTN46_21890) rsmI 4048386..4049267 (+) 882 WP_013350751.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QTN46_RS21895 (QTN46_21895) abrB 4049317..4049607 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  QTN46_RS21900 (QTN46_21900) metG 4050090..4052081 (+) 1992 WP_014469597.1 methionine--tRNA ligase -
  QTN46_RS21905 (QTN46_21905) - 4052158..4052925 (+) 768 WP_014469598.1 TatD family hydrolase -
  QTN46_RS21910 (QTN46_21910) - 4053060..4054379 (+) 1320 WP_014471348.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=847885 QTN46_RS21895 WP_169510469.1 4049317..4049607(-) (abrB) [Bacillus amyloliquefaciens strain SRCM123386]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=847885 QTN46_RS21895 WP_169510469.1 4049317..4049607(-) (abrB) [Bacillus amyloliquefaciens strain SRCM123386]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979