Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QTN46_RS21665 Genome accession   NZ_CP128501
Coordinates   4006797..4007909 (+) Length   370 a.a.
NCBI ID   WP_289394065.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4001797..4012909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS21640 (QTN46_21640) rnpA 4002508..4002858 (-) 351 WP_013354275.1 ribonuclease P protein component -
  QTN46_RS21645 (QTN46_21645) rpmH 4003011..4003145 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  QTN46_RS21650 (QTN46_21650) dnaA 4003767..4005107 (+) 1341 WP_289394063.1 chromosomal replication initiator protein DnaA -
  QTN46_RS21655 (QTN46_21655) dnaN 4005294..4006430 (+) 1137 WP_289394064.1 DNA polymerase III subunit beta -
  QTN46_RS21660 (QTN46_21660) rlbA 4006566..4006781 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  QTN46_RS21665 (QTN46_21665) recF 4006797..4007909 (+) 1113 WP_289394065.1 DNA replication/repair protein RecF Machinery gene
  QTN46_RS21670 (QTN46_21670) remB 4007927..4008172 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  QTN46_RS21675 (QTN46_21675) gyrB 4008229..4010145 (+) 1917 WP_014469589.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QTN46_RS21680 (QTN46_21680) gyrA 4010362..4012821 (+) 2460 WP_013350726.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42471.42 Da        Isoelectric Point: 7.0883

>NTDB_id=847883 QTN46_RS21665 WP_289394065.1 4006797..4007909(+) (recF) [Bacillus amyloliquefaciens strain SRCM123386]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTEQLEKWAQPIHSGISRGLEELTLKYHTALNVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=847883 QTN46_RS21665 WP_289394065.1 4006797..4007909(+) (recF) [Bacillus amyloliquefaciens strain SRCM123386]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTTCTTTCGATGGCAAAATCGCACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAAGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGACTTAAATCTCGTTAAAGGCAGCCCTCAGGTGAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTATCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCGAAAGTTGTCGCCAAACGTCTGCAGTTTACGGAACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTAATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGGCCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTAATTCATGAAGAAATCGGAGAATATCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943