Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QTN46_RS12980 Genome accession   NZ_CP128501
Coordinates   2402099..2402866 (-) Length   255 a.a.
NCBI ID   WP_071347996.1    Uniprot ID   A0AAP7TAR4
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2397099..2407866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS12960 (QTN46_12960) - 2397301..2398113 (-) 813 WP_013352914.1 pyruvate, water dikinase regulatory protein -
  QTN46_RS12965 (QTN46_12965) ccpN 2398139..2398777 (-) 639 WP_014470676.1 transcriptional regulator CcpN -
  QTN46_RS12970 (QTN46_12970) glyS 2398878..2400917 (-) 2040 WP_289393731.1 glycine--tRNA ligase subunit beta -
  QTN46_RS12975 (QTN46_12975) glyQ 2400910..2401797 (-) 888 WP_013352917.1 glycine--tRNA ligase subunit alpha -
  QTN46_RS12980 (QTN46_12980) recO 2402099..2402866 (-) 768 WP_071347996.1 DNA repair protein RecO Machinery gene
  QTN46_RS12985 (QTN46_12985) - 2402903..2403046 (-) 144 WP_007408286.1 YqzL family protein -
  QTN46_RS12990 (QTN46_12990) era 2403200..2404105 (-) 906 WP_014470680.1 GTPase Era -
  QTN46_RS12995 (QTN46_12995) - 2404086..2404496 (-) 411 WP_045510514.1 cytidine deaminase -
  QTN46_RS13000 (QTN46_13000) - 2404619..2404993 (-) 375 WP_014470681.1 diacylglycerol kinase family protein -
  QTN46_RS13005 (QTN46_13005) ybeY 2404974..2405447 (-) 474 WP_065522747.1 rRNA maturation RNase YbeY -
  QTN46_RS13010 (QTN46_13010) - 2405448..2407580 (-) 2133 WP_289393732.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29272.93 Da        Isoelectric Point: 8.7962

>NTDB_id=847854 QTN46_RS12980 WP_071347996.1 2402099..2402866(-) (recO) [Bacillus amyloliquefaciens strain SRCM123386]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFGKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=847854 QTN46_RS12980 WP_071347996.1 2402099..2402866(-) (recO) [Bacillus amyloliquefaciens strain SRCM123386]
ATGCTGACAAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTAACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGTAAAAGCCAGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTAATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.588

100

0.906