Detailed information NTG0847817

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: QTN46_RS01160
• Genome accession: NZ_CP128501
• Coordinates: 245168..246316 (+)
• Length: 382 a.a.
• NCBI ID: WP_013351004.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SRCM123386
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 240168..251316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QTN46_RS01140 (QTN46_01140)	-	240565..241248 (-)	684	WP_014469746.1	ABC transporter ATP-binding protein	-
QTN46_RS01145 (QTN46_01145)	-	241263..242699 (-)	1437	WP_013351001.1	ABC transporter permease	-
QTN46_RS01150 (QTN46_01150)	-	242912..243595 (+)	684	WP_013351002.1	response regulator transcription factor	-
QTN46_RS01155 (QTN46_01155)	-	243582..245009 (+)	1428	WP_161988189.1	HAMP domain-containing sensor histidine kinase	-
QTN46_RS01160 (QTN46_01160)	rapC	245168..246316 (+)	1149	WP_013351004.1	tetratricopeptide repeat protein	Regulator
QTN46_RS01165 (QTN46_01165)	phrC	246300..246419 (+)	120	WP_013351005.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
QTN46_RS01170 (QTN46_01170)	-	246567..246668 (-)	102	WP_013351006.1	YjcZ family sporulation protein	-
QTN46_RS01175 (QTN46_01175)	-	246763..248127 (-)	1365	WP_014469748.1	aspartate kinase	-
QTN46_RS01180 (QTN46_01180)	ceuB	248541..249494 (+)	954	WP_013351008.1	ABC transporter permease	Machinery gene
QTN46_RS01185 (QTN46_01185)	-	249484..250431 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
QTN46_RS01190 (QTN46_01190)	-	250425..251183 (+)	759	WP_013351009.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45545.80 Da
• Isoelectric Point: 5.0674

>NTDB_id=847817 QTN46_RS01160 WP_013351004.1 245168..246316(+) (rapC) [Bacillus amyloliquefaciens strain SRCM123386]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=847817 QTN46_RS01160 WP_013351004.1 245168..246316(+) (rapC) [Bacillus amyloliquefaciens strain SRCM123386]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCAGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATCACGTATTATAAACAGGCTGAGAAAAAATTGGCCT
TCGTATCGGACCACGTGGAGCGCGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAATGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTGTTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAT
GAAGCCATACCGTACTTTGAACGGGCAGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTCCCTCAGGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTCGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.723	100	0.827
rapF	Bacillus subtilis subsp. subtilis str. 168	57.368	99.476	0.571