Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QTN46_RS00970 Genome accession   NZ_CP128501
Coordinates   187295..187732 (-) Length   145 a.a.
NCBI ID   WP_013350968.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 182295..192732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS00945 (QTN46_00945) - 183312..184448 (+) 1137 WP_014469722.1 zinc-dependent alcohol dehydrogenase -
  QTN46_RS00950 (QTN46_00950) - 184463..184897 (+) 435 WP_013350964.1 RDD family protein -
  QTN46_RS00955 (QTN46_00955) - 184971..185294 (+) 324 WP_013350965.1 YckD family protein -
  QTN46_RS00960 (QTN46_00960) - 185399..186835 (+) 1437 WP_289394132.1 family 1 glycosylhydrolase -
  QTN46_RS00965 (QTN46_00965) nin/comJ 186876..187274 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  QTN46_RS00970 (QTN46_00970) nucA/comI 187295..187732 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QTN46_RS00975 (QTN46_00975) hxlB 188083..188640 (-) 558 WP_013350969.1 6-phospho-3-hexuloisomerase -
  QTN46_RS00980 (QTN46_00980) hxlA 188637..189272 (-) 636 WP_013350970.1 3-hexulose-6-phosphate synthase -
  QTN46_RS00985 (QTN46_00985) - 189504..189866 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=847815 QTN46_RS00970 WP_013350968.1 187295..187732(-) (nucA/comI) [Bacillus amyloliquefaciens strain SRCM123386]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=847815 QTN46_RS00970 WP_013350968.1 187295..187732(-) (nucA/comI) [Bacillus amyloliquefaciens strain SRCM123386]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAACAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641