Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QTN45_RS19750 Genome accession   NZ_CP128500
Coordinates   3829389..3830501 (-) Length   370 a.a.
NCBI ID   WP_013350724.1    Uniprot ID   A0AAE2NV61
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3824389..3835501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS19735 (QTN45_19735) gyrA 3824477..3826936 (-) 2460 WP_013350726.1 DNA gyrase subunit A -
  QTN45_RS19740 (QTN45_19740) gyrB 3827153..3829069 (-) 1917 WP_014469589.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QTN45_RS19745 (QTN45_19745) remB 3829126..3829371 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  QTN45_RS19750 (QTN45_19750) recF 3829389..3830501 (-) 1113 WP_013350724.1 DNA replication/repair protein RecF Machinery gene
  QTN45_RS19755 (QTN45_19755) rlbA 3830517..3830732 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  QTN45_RS19760 (QTN45_19760) dnaN 3830872..3832008 (-) 1137 WP_014469588.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42414.36 Da        Isoelectric Point: 7.0883

>NTDB_id=847812 QTN45_RS19750 WP_013350724.1 3829389..3830501(-) (recF) [Bacillus amyloliquefaciens strain SRCM123364]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=847812 QTN45_RS19750 WP_013350724.1 3829389..3830501(-) (recF) [Bacillus amyloliquefaciens strain SRCM123364]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTTCTTTCGATGGCAAAATCGCACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAAGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGACTTAAATCTCGTTAAAGGCAGCCCTCAGGTGAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTATCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCGAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGGCCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTAATTCATGAAGAAATCGGAGAATATCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGTGT
GGATGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.865

100

0.949