Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QTN45_RS19520 Genome accession   NZ_CP128500
Coordinates   3787695..3787985 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3782695..3792985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS19505 (QTN45_19505) - 3782923..3784242 (-) 1320 WP_014471348.1 G5 and 3D domain-containing protein -
  QTN45_RS19510 (QTN45_19510) - 3784377..3785144 (-) 768 WP_014469598.1 TatD family hydrolase -
  QTN45_RS19515 (QTN45_19515) metG 3785221..3787212 (-) 1992 WP_014469597.1 methionine--tRNA ligase -
  QTN45_RS19520 (QTN45_19520) abrB 3787695..3787985 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  QTN45_RS19525 (QTN45_19525) rsmI 3788035..3788916 (-) 882 WP_013350751.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QTN45_RS19530 (QTN45_19530) - 3788891..3789190 (-) 300 WP_013350750.1 GIY-YIG nuclease family protein -
  QTN45_RS19535 (QTN45_19535) - 3789177..3789920 (-) 744 WP_013350749.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QTN45_RS19540 (QTN45_19540) yabA 3789981..3790340 (-) 360 WP_013350748.1 replication initiation-control protein YabA -
  QTN45_RS19545 (QTN45_19545) ricT 3790355..3791182 (-) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT -
  QTN45_RS19550 (QTN45_19550) holB 3791185..3792174 (-) 990 WP_013350746.1 DNA polymerase III subunit delta' -
  QTN45_RS19555 (QTN45_19555) - 3792186..3792626 (-) 441 WP_013350745.1 DUF327 family protein -
  QTN45_RS19560 (QTN45_19560) darA 3792639..3792968 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=847810 QTN45_RS19520 WP_169510469.1 3787695..3787985(+) (abrB) [Bacillus amyloliquefaciens strain SRCM123364]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=847810 QTN45_RS19520 WP_169510469.1 3787695..3787985(+) (abrB) [Bacillus amyloliquefaciens strain SRCM123364]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979