Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ikematsu_RS01605 Genome accession   NZ_AP024320
Coordinates   305553..306926 (-) Length   457 a.a.
NCBI ID   WP_204023562.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain ike38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 300553..311926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ikematsu_RS01590 (ikematsu_03040) - 302183..302752 (-) 570 WP_004562737.1 TIGR01440 family protein -
  ikematsu_RS01595 (ikematsu_03050) gltX 302820..304316 (-) 1497 WP_012390831.1 glutamate--tRNA ligase -
  ikematsu_RS01600 (ikematsu_03060) - 304387..305520 (-) 1134 WP_204023549.1 PIN/TRAM domain-containing protein -
  ikematsu_RS01605 (ikematsu_03070) radA 305553..306926 (-) 1374 WP_204023562.1 DNA repair protein RadA Machinery gene
  ikematsu_RS01610 (ikematsu_03080) - 306939..307478 (-) 540 WP_004563338.1 dUTP diphosphatase -
  ikematsu_RS01615 (ikematsu_03090) - 307678..307989 (+) 312 WP_004562732.1 GNAT family N-acetyltransferase -
  ikematsu_RS01620 (ikematsu_03100) rpiA 308001..308687 (+) 687 WP_014562151.1 ribose-5-phosphate isomerase RpiA -
  ikematsu_RS01625 (ikematsu_03110) - 308715..309329 (+) 615 WP_004563340.1 sugar O-acetyltransferase -
  ikematsu_RS01630 (ikematsu_03120) - 309393..310730 (+) 1338 WP_204023567.1 C1 family peptidase -
  ikematsu_RS01635 (ikematsu_03130) - 311047..311922 (-) 876 WP_114807253.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49443.88 Da        Isoelectric Point: 8.7358

>NTDB_id=84781 ikematsu_RS01605 WP_204023562.1 305553..306926(-) (radA) [Limosilactobacillus fermentum strain ike38]
MAKAKTHFVCQNCGYNSPRYLGRCPNCGQWSTLVEEVEQASTPAAKNATATLTGIVARPQRIQEIDTKKTPRVKTRLNEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSMEHHKVLYVSGEESASQIKLRAQRLDVSGEDFYIYPETNMEAIR
ATIDSIQPEFVIIDSVQTMQAADVTSAIGSVSQIRAVTAQLMQIAKGQNITVFVVGHVTKGGVLAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMNTRGLTEVANPSEIFLEERLKDATGSAVVVSLEGTRPILVEIQALITPTVF
GNAQRTATGLNRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVAIASSYRDKGTRPTDAFVGEVGLT
GEIRRVSRIEQRVAEAAKLGFKRILVPKNNLAGWNPPQDIEVVGVTTLGEALKITLG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=84781 ikematsu_RS01605 WP_204023562.1 305553..306926(-) (radA) [Limosilactobacillus fermentum strain ike38]
ATGGCAAAAGCCAAAACACACTTTGTCTGCCAAAACTGCGGTTACAATTCACCGCGCTATTTAGGGCGGTGTCCCAATTG
TGGCCAGTGGAGTACCTTAGTTGAAGAAGTCGAGCAGGCAAGTACCCCGGCGGCTAAAAACGCTACGGCAACCTTAACCG
GGATTGTGGCCCGGCCCCAGCGAATCCAAGAAATTGACACCAAAAAAACGCCCCGGGTTAAGACCCGCTTAAATGAGTTA
AACCGGGTGCTAGGTGGCGGAATTGTACCCGGCTCGTTGGTCTTAATTGGTGGGGATCCCGGGATCGGAAAGTCCACCCT
GCTCTTACAAGTGTCGGGGCAACTGAGCATGGAACACCACAAGGTTCTTTACGTTTCCGGGGAAGAATCGGCCTCCCAAA
TTAAATTGCGGGCCCAACGCTTAGACGTTTCCGGCGAGGACTTTTATATCTACCCGGAAACCAACATGGAAGCCATCCGG
GCGACGATTGATTCCATTCAGCCCGAGTTTGTAATCATTGACTCGGTTCAGACGATGCAGGCGGCCGACGTGACCTCGGC
GATTGGGTCGGTCTCCCAAATCCGGGCGGTCACCGCCCAGTTGATGCAGATTGCCAAGGGGCAAAACATCACGGTCTTCG
TGGTTGGTCACGTCACCAAGGGTGGGGTCTTAGCCGGGCCCAAGATCTTGGAACACATGGTTGACACGGTGCTGTACTTT
GAAGGGGACCTCCACCACACCTACCGGATTTTACGGTCGGTCAAAAACCGGTTTGGGTCCACCAATGAGTTAGGGATCTT
CGAAATGAATACCCGCGGTTTGACCGAGGTCGCAAACCCCTCGGAAATCTTTTTGGAAGAGCGGCTTAAGGATGCCACCG
GGTCGGCCGTGGTCGTATCCCTGGAGGGAACCCGACCGATCCTGGTTGAAATCCAGGCCTTGATCACGCCAACCGTCTTT
GGAAACGCCCAAAGAACGGCGACGGGTTTAAACCGCAACCGGGTTTCCTTGATCATGGCGGTCCTAGAAAAACGGGCGAA
CCTGCTCTTACAAAACCAGGATGCCTACTTGAAGGCGGCCGGGGGCGTTAAGTTAGACGAGCCGGCCATCGACCTTGCGA
TCGCGGTGGCAATTGCTTCTTCTTACCGGGATAAGGGGACCCGGCCGACCGACGCCTTCGTCGGTGAAGTTGGCTTAACC
GGGGAGATCCGTCGGGTGAGCCGAATTGAACAGCGGGTGGCCGAAGCCGCTAAACTAGGCTTTAAGCGGATTTTAGTGCC
CAAAAACAATTTAGCGGGTTGGAACCCGCCGCAAGACATCGAAGTCGTGGGGGTAACGACCCTTGGCGAAGCACTTAAAA
TTACCCTTGGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

68.212

99.125

0.676
  radA Streptococcus mitis NCTC 12261

67.991

99.125

0.674
  radA Streptococcus pneumoniae Rx1

67.991

99.125

0.674
  radA Streptococcus pneumoniae D39

67.991

99.125

0.674
  radA Streptococcus pneumoniae R6

67.991

99.125

0.674
  radA Streptococcus pneumoniae TIGR4

67.991

99.125

0.674
  radA Bacillus subtilis subsp. subtilis str. 168

63.676

100

0.637

Multiple sequence alignment