Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QTN45_RS17825 Genome accession   NZ_CP128500
Coordinates   3450415..3451563 (-) Length   382 a.a.
NCBI ID   WP_013351004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3445415..3456563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS17795 (QTN45_17795) - 3445548..3446306 (-) 759 WP_013351009.1 ABC transporter ATP-binding protein -
  QTN45_RS17800 (QTN45_17800) - 3446300..3447247 (-) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  QTN45_RS17805 (QTN45_17805) ceuB 3447237..3448190 (-) 954 WP_013351008.1 ABC transporter permease Machinery gene
  QTN45_RS17810 (QTN45_17810) - 3448604..3449968 (+) 1365 WP_289412533.1 aspartate kinase -
  QTN45_RS17815 (QTN45_17815) - 3450063..3450164 (+) 102 WP_013351006.1 YjcZ family sporulation protein -
  QTN45_RS17820 (QTN45_17820) phrC 3450312..3450431 (-) 120 WP_013351005.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QTN45_RS17825 (QTN45_17825) rapC 3450415..3451563 (-) 1149 WP_013351004.1 tetratricopeptide repeat protein Regulator
  QTN45_RS17830 (QTN45_17830) - 3451722..3453149 (-) 1428 WP_161988189.1 HAMP domain-containing sensor histidine kinase -
  QTN45_RS17835 (QTN45_17835) - 3453136..3453819 (-) 684 WP_013351002.1 response regulator transcription factor -
  QTN45_RS17840 (QTN45_17840) - 3454032..3455468 (+) 1437 WP_013351001.1 ABC transporter permease -
  QTN45_RS17845 (QTN45_17845) - 3455483..3456166 (+) 684 WP_014469746.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45545.80 Da        Isoelectric Point: 5.0674

>NTDB_id=847803 QTN45_RS17825 WP_013351004.1 3450415..3451563(-) (rapC) [Bacillus amyloliquefaciens strain SRCM123364]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=847803 QTN45_RS17825 WP_013351004.1 3450415..3451563(-) (rapC) [Bacillus amyloliquefaciens strain SRCM123364]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATCACGTATTATAAACAGGCTGAGAAAAAATTGGCCT
TCGTATCGGACCACGTGGAGCGCGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAATGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTGTTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAT
GAAGCCATACCGTACTTTGAACGGGCAGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTCCCTCAGGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTCGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.723

100

0.827
  rapF Bacillus subtilis subsp. subtilis str. 168

57.368

99.476

0.571