Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QTN45_RS07985 Genome accession   NZ_CP128500
Coordinates   1523002..1524732 (+) Length   576 a.a.
NCBI ID   WP_013352827.1    Uniprot ID   A0A9P1JI53
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1518002..1529732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS07960 (QTN45_07960) - 1518404..1518658 (+) 255 WP_013352832.1 exodeoxyribonuclease VII small subunit -
  QTN45_RS07965 (QTN45_07965) - 1518648..1519538 (+) 891 WP_013352831.1 polyprenyl synthetase family protein -
  QTN45_RS07970 (QTN45_07970) dxs 1519681..1521582 (+) 1902 WP_013352830.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QTN45_RS07975 (QTN45_07975) - 1521579..1522424 (+) 846 WP_013352829.1 TlyA family RNA methyltransferase -
  QTN45_RS07980 (QTN45_07980) argR 1522521..1522970 (+) 450 WP_013352828.1 transcriptional regulator ArgR -
  QTN45_RS07985 (QTN45_07985) recN 1523002..1524732 (+) 1731 WP_013352827.1 DNA repair protein RecN Machinery gene
  QTN45_RS07990 (QTN45_07990) spoIVB 1524896..1526176 (+) 1281 WP_014470651.1 SpoIVB peptidase -
  QTN45_RS07995 (QTN45_07995) spo0A 1526457..1527257 (+) 801 WP_013352825.1 sporulation transcription factor Spo0A Regulator
  QTN45_RS08000 (QTN45_08000) - 1527252..1527386 (-) 135 WP_014470649.1 hypothetical protein -
  QTN45_RS08005 (QTN45_08005) alr 1527447..1528628 (-) 1182 WP_013352824.1 alanine racemase -
  QTN45_RS08010 (QTN45_08010) - 1528814..1529026 (-) 213 WP_013352823.1 spore germination protein -
  QTN45_RS08015 (QTN45_08015) - 1529151..1529363 (-) 213 WP_014470647.1 spore germination protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64076.93 Da        Isoelectric Point: 4.7328

>NTDB_id=847775 QTN45_RS07985 WP_013352827.1 1523002..1524732(+) (recN) [Bacillus amyloliquefaciens strain SRCM123364]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYREGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSETVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLETLKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSADEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKELKDGRTTTHVTPLSQQDKVAEIGRMIAGVEVTDLTKR
HAKELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=847775 QTN45_RS07985 WP_013352827.1 1523002..1524732(+) (recN) [Bacillus amyloliquefaciens strain SRCM123364]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATCTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGAGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTAGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATCGCGGCTTTAAGGGAGATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAGCATTTAGAGCTTTTAGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAG
GCTTACCGTGAAGGCTATGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAGAGCGAGCAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCGGCTAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AGGAAGAACGGAAGCAAATATCCAACTTTGAGAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGTCTCGACTGGGTCGGAATGGCTTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCCGAAACTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCAACCTTTCAGATGCGCAATTTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGATATTCTGGAATACGGCTCAAAGATAGAAGAGGAAATTGATCAAATCGAGAACCGTGACAGCCACCTTGAAACGCT
GAAGAAGGAACTGGAGTCCGTGGGCAAAGATGTGGCCGTAGAAGCCGCCAACTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAACTGGCTGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGGAAATCTACGTTTGATACGGAATTTCTTGTG
AAAACCGATCCGTCAGCCGATGAAGCGCCAGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGCATTGACCTTGT
GAAATTTTTAATTTCAACAAATACCGGTGAGCCTCTCAAGCCGCTGTCAAAGGTTGCGTCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGATAAAGAGTATTTTTTCTTCTCAGCAGGATGTCACTTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCGCAGGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACATCT
CCCGCAGGTTGCCGCCATGGCGGACACGCACCTTTTGATCGCGAAAGAATTAAAAGACGGCCGGACGACGACGCATGTCA
CGCCGCTTTCCCAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACAGATCTGACAAAACGG
CATGCAAAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.062

100

0.891