Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   V5A90_RS03990 Genome accession   NZ_CP144885
Coordinates   828836..830068 (-) Length   410 a.a.
NCBI ID   WP_001161834.1    Uniprot ID   -
Organism   Escherichia coli strain TC_EC10     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 823836..835068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5A90_RS03970 (V5A90_03975) - 824591..825337 (+) 747 WP_000497656.1 glycosyltransferase family 2 protein -
  V5A90_RS03975 (V5A90_03980) - 825318..825689 (+) 372 WP_001309753.1 capsular polysaccharide biosynthesis protein -
  V5A90_RS03980 (V5A90_03985) - 825686..827263 (+) 1578 WP_000600936.1 hypothetical protein -
  V5A90_RS03985 (V5A90_03990) - 827481..828590 (-) 1110 Protein_783 IS3 family transposase -
  V5A90_RS03990 (V5A90_03995) kpsS 828836..830068 (-) 1233 WP_001161834.1 capsular biosynthesis protein Regulator
  V5A90_RS03995 (V5A90_04000) - 830103..832130 (-) 2028 WP_000579512.1 capsular polysaccharide biosynthesis protein -
  V5A90_RS04000 (V5A90_04005) kdsB 832127..832867 (-) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V5A90_RS04005 (V5A90_04010) - 832877..834553 (-) 1677 WP_001323195.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48905.37 Da        Isoelectric Point: 10.0344

>NTDB_id=847774 V5A90_RS03990 WP_001161834.1 828836..830068(-) (kpsS) [Escherichia coli strain TC_EC10]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWHEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDIKLFKKFRGYLLVKTQVNWVYYSNSNLCAYNSK
WAHVNLMDYN

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=847774 V5A90_RS03990 WP_001161834.1 828836..830068(-) (kpsS) [Escherichia coli strain TC_EC10]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGATGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCCTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGCATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATAAAACTGTTTAAGAAGT
TTCGCGGGTATTTATTGGTTAAGACGCAGGTTAATTGGGTTTATTATTCCAATAGTAATCTATGTGCATATAATAGTAAG
TGGGCTCATGTTAATTTAATGGATTATAATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

95.366

0.38