Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QTN45_RS07490 Genome accession   NZ_CP128500
Coordinates   1441179..1441946 (+) Length   255 a.a.
NCBI ID   WP_289413128.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1436179..1446946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS07460 (QTN45_07460) - 1436464..1438596 (+) 2133 WP_013352923.1 HD family phosphohydrolase -
  QTN45_RS07465 (QTN45_07465) ybeY 1438597..1439070 (+) 474 WP_065522747.1 rRNA maturation RNase YbeY -
  QTN45_RS07470 (QTN45_07470) - 1439051..1439425 (+) 375 WP_289413125.1 diacylglycerol kinase family protein -
  QTN45_RS07475 (QTN45_07475) - 1439548..1439958 (+) 411 WP_045510514.1 cytidine deaminase -
  QTN45_RS07480 (QTN45_07480) era 1439939..1440844 (+) 906 WP_014470680.1 GTPase Era -
  QTN45_RS07485 (QTN45_07485) - 1440999..1441142 (+) 144 WP_007408286.1 YqzL family protein -
  QTN45_RS07490 (QTN45_07490) recO 1441179..1441946 (+) 768 WP_289413128.1 DNA repair protein RecO Machinery gene
  QTN45_RS07495 (QTN45_07495) glyQ 1442248..1443135 (+) 888 WP_013352917.1 glycine--tRNA ligase subunit alpha -
  QTN45_RS07500 (QTN45_07500) glyS 1443128..1445167 (+) 2040 WP_014470677.1 glycine--tRNA ligase subunit beta -
  QTN45_RS07505 (QTN45_07505) ccpN 1445268..1445906 (+) 639 WP_014470676.1 transcriptional regulator CcpN -
  QTN45_RS07510 (QTN45_07510) - 1445932..1446744 (+) 813 WP_013352914.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29260.87 Da        Isoelectric Point: 8.7962

>NTDB_id=847766 QTN45_RS07490 WP_289413128.1 1441179..1441946(+) (recO) [Bacillus amyloliquefaciens strain SRCM123364]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
TREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFGKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=847766 QTN45_RS07490 WP_289413128.1 1441179..1441946(+) (recO) [Bacillus amyloliquefaciens strain SRCM123364]
ATGCTGACAAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ACCAGAGAAGACTTGTTTTTAACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGTAAAAGCCAGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTAATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.196

100

0.902