Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   V4U93_RS10005 Genome accession   NZ_CP144755
Coordinates   1972383..1974131 (-) Length   582 a.a.
NCBI ID   WP_099960416.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1967383..1979131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS09985 (V4U93_09985) - 1968495..1969964 (+) 1470 WP_016265778.1 ABC transporter permease -
  V4U93_RS09990 (V4U93_09990) - 1969980..1970642 (+) 663 WP_011375523.1 ABC transporter ATP-binding protein -
  V4U93_RS09995 (V4U93_09995) - 1970736..1971224 (+) 489 WP_099960415.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  V4U93_RS10000 (V4U93_10000) - 1971268..1971921 (-) 654 WP_011375525.1 MIP family channel protein -
  V4U93_RS10005 (V4U93_10005) recQ 1972383..1974131 (-) 1749 WP_099960416.1 DNA helicase RecQ Machinery gene
  V4U93_RS10010 (V4U93_10010) - 1974244..1974804 (-) 561 WP_011375528.1 TMEM175 family protein -
  V4U93_RS10015 (V4U93_10015) - 1974916..1975440 (+) 525 WP_239494534.1 hypothetical protein -
  V4U93_RS10020 (V4U93_10020) - 1975458..1975688 (+) 231 WP_231953259.1 hypothetical protein -
  V4U93_RS10025 (V4U93_10025) - 1975706..1976218 (+) 513 WP_099960417.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  V4U93_RS10030 (V4U93_10030) - 1976334..1976717 (+) 384 WP_082268187.1 YxeA family protein -
  V4U93_RS10035 (V4U93_10035) - 1976761..1977300 (-) 540 WP_076645062.1 cysteine hydrolase family protein -
  V4U93_RS10040 (V4U93_10040) - 1977414..1977812 (+) 399 WP_076645064.1 AsnC family transcriptional regulator -
  V4U93_RS10045 (V4U93_10045) - 1977847..1978266 (-) 420 WP_157771211.1 DUF2992 family protein -
  V4U93_RS10050 (V4U93_10050) - 1978439..1979080 (-) 642 WP_035146842.1 DNA alkylation repair protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65752.34 Da        Isoelectric Point: 5.0874

>NTDB_id=847756 V4U93_RS10005 WP_099960416.1 1972383..1974131(-) (recQ) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MQAQAVLKEKFGYDHFREGQADVIESLLAGTNVLAIMPTGGGKSLCYQIPALMLPGLTLVVSPLISLMKDQVDALNENGI
PATFINSTLTQGEVQERFNQAARGEVKLLYVSPERLDSDYFLADLAELTIDLIAVDEAHCISQWGHDFRPSYLRLTDTIK
SMRQQPTIVALTATATSQVADDIMLRLGIQHEVKTGFSRENLAFQVVKNQNSDRYLIDYLKVNQQKSGIIYASTRKEVER
LTKLIEKAKLAVTMYHGGLNEMVRRQNQEDFLYDRKPIMVATNAFGMGIDKSNVRFVVHAQIPGSLEAYYQEAGRAGRDG
LPSEAILLFKVNDVQIQHFFIDQSEMDDENKQREYAKLQEMTQYANTQQCLQQYIVNYFDDDCEKCGRCSNCLDTRESQD
ITIDVQKVLSCIKRMDERFGKVMVAQVLTGSKNQKIMQFRFDELPTYGLMRGDSQKEVSGLIDYLVASGYLRASGGQYPV
LQITLAGVKVLKGQEKVSRKMAAKVQKTLPEDNELFERLRELRRDLAEEQGVPPFVIFSDKTLYSMCEIMPTSLTEMLDV
KGVGENKLEKYGELFLDILVAE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=847756 V4U93_RS10005 WP_099960416.1 1972383..1974131(-) (recQ) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGCAGGCACAAGCAGTACTAAAAGAAAAATTTGGCTATGATCATTTTAGAGAAGGCCAAGCAGATGTGATTGAATCCTT
GCTAGCAGGGACCAATGTATTGGCGATTATGCCGACTGGTGGCGGGAAGTCGTTATGTTACCAGATTCCAGCGCTGATGT
TACCGGGGTTAACGCTAGTCGTTTCACCATTGATTTCGCTGATGAAAGATCAAGTCGACGCGCTCAACGAAAATGGGATT
CCGGCAACGTTTATCAATAGTACCTTGACGCAAGGTGAGGTGCAGGAGCGCTTCAATCAGGCCGCACGTGGTGAAGTCAA
ATTGCTTTATGTGTCGCCAGAACGGTTGGATTCTGATTACTTTTTAGCGGATTTAGCCGAATTAACGATTGATTTGATTG
CCGTCGATGAAGCGCATTGTATCTCGCAATGGGGGCACGATTTTCGACCTAGTTATCTACGCTTGACGGATACAATTAAA
AGCATGCGACAACAACCAACAATTGTCGCACTAACGGCGACTGCTACATCACAAGTAGCTGATGATATTATGTTGCGCTT
AGGGATTCAACATGAAGTTAAGACTGGTTTTTCACGGGAAAACCTGGCCTTTCAAGTGGTTAAAAATCAAAACAGTGATC
GCTACTTAATCGATTATTTGAAAGTTAACCAGCAAAAATCGGGCATCATTTATGCTAGTACTCGGAAAGAAGTTGAACGG
CTCACGAAGCTGATTGAAAAAGCGAAACTGGCAGTCACGATGTATCATGGTGGTTTAAATGAAATGGTGCGTCGGCAAAA
CCAAGAGGATTTTCTCTACGATCGTAAACCGATTATGGTCGCCACGAATGCTTTTGGGATGGGGATTGATAAGAGTAATG
TGCGGTTTGTCGTGCATGCCCAAATTCCCGGCAGCTTAGAAGCTTATTATCAAGAAGCAGGTCGGGCTGGCCGTGATGGC
TTACCAAGTGAGGCCATCTTACTGTTTAAAGTCAATGATGTCCAAATCCAACATTTTTTCATCGATCAATCAGAGATGGA
CGATGAAAATAAGCAACGGGAATACGCTAAGTTACAAGAAATGACACAATACGCCAACACGCAACAGTGCTTGCAACAAT
ATATCGTCAATTATTTTGATGATGACTGTGAAAAATGTGGCCGTTGTAGCAATTGTCTTGATACACGCGAATCACAAGAC
ATTACAATTGATGTTCAAAAGGTTTTATCGTGCATCAAGCGAATGGATGAACGTTTCGGCAAAGTAATGGTCGCGCAAGT
CTTGACGGGCTCTAAGAATCAGAAGATTATGCAGTTCCGCTTTGATGAATTGCCAACATACGGTTTGATGCGGGGCGATT
CACAAAAAGAAGTCAGTGGTTTGATTGATTATTTAGTCGCATCAGGCTATTTACGGGCTTCTGGTGGTCAATATCCCGTT
TTACAGATCACGTTGGCGGGCGTCAAAGTACTTAAGGGTCAAGAAAAAGTGTCGCGTAAAATGGCTGCTAAGGTTCAAAA
AACATTGCCTGAAGATAATGAGTTATTCGAACGCTTACGCGAATTACGCCGTGATTTAGCTGAAGAACAGGGTGTACCAC
CATTTGTAATCTTCTCAGATAAGACGTTGTATTCAATGTGTGAAATTATGCCAACCTCACTGACTGAAATGTTAGATGTT
AAAGGTGTCGGGGAGAATAAATTAGAAAAATATGGTGAATTATTCTTGGATATTTTAGTTGCTGAGTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(513-579)

RecQ zinc-binding (RecQ_Zn_bind)

(332-393)

Helicase conserved C-terminal domain (Helicase_C)

(214-319)

DEAD/DEAH box helicase (DEAD)

(19-180)

RQC domain (RQC)

(396-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

52.332

99.485

0.521