Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | V4U93_RS09625 | Genome accession | NZ_CP144755 |
| Coordinates | 1894094..1896562 (-) | Length | 822 a.a. |
| NCBI ID | WP_234057649.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei subsp. sakei strain DCF0720 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1889094..1901562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V4U93_RS09610 (V4U93_09610) | - | 1890562..1890894 (-) | 333 | WP_035147341.1 | carboxymuconolactone decarboxylase family protein | - |
| V4U93_RS09615 (V4U93_09615) | - | 1891077..1891961 (+) | 885 | WP_035147339.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| V4U93_RS09620 (V4U93_09620) | - | 1892099..1894024 (+) | 1926 | WP_338453713.1 | fructose-1,6-bisphosphatase | - |
| V4U93_RS09625 (V4U93_09625) | clpC | 1894094..1896562 (-) | 2469 | WP_234057649.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| V4U93_RS09630 (V4U93_09630) | - | 1896580..1897050 (-) | 471 | WP_016265729.1 | CtsR family transcriptional regulator | - |
Sequence
Protein
Download Length: 822 a.a. Molecular weight: 90513.91 Da Isoelectric Point: 6.3629
>NTDB_id=847755 V4U93_RS09625 WP_234057649.1 1894094..1896562(-) (clpC) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MNNLFTPSAKNVLMLAQEQAKKFNHHALGTEHLLLALVLESEGIAGNALRELGVTPTDVLEEIERLTGYGNSIVAMGVGG
YLPYSPKAKQVLDLARVESQQANSVKIGTAHLLLALLRDDDIIAARILLNLGLSLAKTRQLLLQKMGIDAATAKKRAKAS
AKKVDQEGTPTLNQLARDLTQMARENQIDPVVGRDSEVKRLVQILARRSKNNPVLVGEPGVGKTAIAEGFAQRIINGDVP
SDMQQKRLMMLDMGSLVAGTKYRGEFEDRLKKIIEEIHEDGQVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQL
IGATTLDEYQKYIEKDAALERRFATVTVDEPTPEDAEQILRGLRPRYEEHHGITISDEALHEAVVLANRYITNRFLPDKA
IDLMDEAAAKVRLDAVNQKSPIDRLETELQSLAKEKEVAVGAQDFEKAAAIHEKEIIAKAKMAKRQAAEQENGVRTDIQV
QPEDIAQVVAQWTGVPVTQLQRKESERLLQLEKVLHERVVGQEEAISAVARAIRRARSGLKDPKRPIGSFMFLGPTGVGK
TELAKALAEAMFGSEDNLIRVDMSEYMERYSTSRLVGAAPGYVGYDEGGQLTEKVRNKPYSVVLFDEVEKAHPDVFNILL
QVLDDGYLTDSKGRKVDFRNTIMIMTSNLGATALRDDKSVGFGVKDVTADYKAMQGRILEELKKSFRPEFLNRIDETVVF
HSLTQPELREIVKIMSKGILNRLAEQGVKIKMTAAAMDVVAKAGFDPEYGARPIRRALQTQVEDRLSEALLAGEITTDTP
VTIGATKGEITINSKKEKTTVK
MNNLFTPSAKNVLMLAQEQAKKFNHHALGTEHLLLALVLESEGIAGNALRELGVTPTDVLEEIERLTGYGNSIVAMGVGG
YLPYSPKAKQVLDLARVESQQANSVKIGTAHLLLALLRDDDIIAARILLNLGLSLAKTRQLLLQKMGIDAATAKKRAKAS
AKKVDQEGTPTLNQLARDLTQMARENQIDPVVGRDSEVKRLVQILARRSKNNPVLVGEPGVGKTAIAEGFAQRIINGDVP
SDMQQKRLMMLDMGSLVAGTKYRGEFEDRLKKIIEEIHEDGQVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQL
IGATTLDEYQKYIEKDAALERRFATVTVDEPTPEDAEQILRGLRPRYEEHHGITISDEALHEAVVLANRYITNRFLPDKA
IDLMDEAAAKVRLDAVNQKSPIDRLETELQSLAKEKEVAVGAQDFEKAAAIHEKEIIAKAKMAKRQAAEQENGVRTDIQV
QPEDIAQVVAQWTGVPVTQLQRKESERLLQLEKVLHERVVGQEEAISAVARAIRRARSGLKDPKRPIGSFMFLGPTGVGK
TELAKALAEAMFGSEDNLIRVDMSEYMERYSTSRLVGAAPGYVGYDEGGQLTEKVRNKPYSVVLFDEVEKAHPDVFNILL
QVLDDGYLTDSKGRKVDFRNTIMIMTSNLGATALRDDKSVGFGVKDVTADYKAMQGRILEELKKSFRPEFLNRIDETVVF
HSLTQPELREIVKIMSKGILNRLAEQGVKIKMTAAAMDVVAKAGFDPEYGARPIRRALQTQVEDRLSEALLAGEITTDTP
VTIGATKGEITINSKKEKTTVK
Nucleotide
Download Length: 2469 bp
>NTDB_id=847755 V4U93_RS09625 WP_234057649.1 1894094..1896562(-) (clpC) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGAATAATCTATTTACACCAAGTGCCAAAAACGTTTTAATGTTAGCGCAAGAACAAGCTAAGAAGTTTAATCATCATGC
ATTAGGGACGGAACATCTGTTATTAGCGCTCGTCCTCGAAAGCGAAGGGATTGCTGGGAACGCACTACGTGAACTCGGTG
TGACACCCACTGATGTCTTAGAAGAAATTGAACGCTTAACCGGTTATGGTAATTCAATCGTTGCCATGGGTGTGGGCGGC
TATTTGCCATACTCACCTAAAGCTAAACAAGTGCTAGATTTAGCGCGCGTTGAATCACAACAAGCTAACTCAGTCAAAAT
CGGGACGGCACACCTATTACTAGCGTTATTACGCGATGATGACATTATTGCGGCTCGTATTCTATTAAACTTAGGCCTCA
GTTTAGCCAAAACACGTCAATTATTACTCCAAAAGATGGGGATTGATGCTGCAACTGCTAAGAAACGCGCTAAAGCCAGT
GCTAAAAAGGTTGATCAAGAAGGCACGCCTACTTTGAATCAATTGGCACGCGATTTAACCCAAATGGCCCGCGAAAATCA
AATTGATCCAGTCGTTGGTCGTGATTCAGAAGTTAAACGACTCGTGCAAATCCTAGCACGTCGTTCTAAAAATAATCCCG
TTTTAGTTGGCGAACCCGGTGTCGGTAAAACAGCGATTGCTGAAGGCTTTGCCCAACGGATTATCAACGGTGATGTGCCA
AGCGACATGCAACAAAAACGGTTAATGATGCTTGATATGGGCTCATTAGTCGCTGGCACTAAGTATCGTGGGGAATTTGA
AGATCGTCTCAAGAAGATTATTGAAGAAATCCATGAAGATGGCCAAGTAATCCTCTTTATCGATGAATTGCATACCTTAA
TTGGTGCTGGTGGGGCAGAAGGCGCAATTGACGCCTCAAATATTTTGAAACCAGCCCTCGCCCGTGGCGAATTGCAATTA
ATCGGTGCAACAACACTTGATGAATACCAAAAATACATCGAAAAAGATGCAGCTCTAGAACGGCGCTTCGCGACGGTGAC
GGTTGATGAACCAACACCAGAAGATGCGGAACAAATCTTACGCGGGTTACGACCACGTTATGAAGAACATCACGGCATCA
CAATCTCTGATGAAGCATTACACGAAGCCGTTGTTTTAGCGAACCGTTATATCACAAACCGTTTCTTACCTGATAAGGCA
ATTGATTTGATGGATGAGGCGGCTGCAAAGGTCAGATTAGATGCTGTTAACCAAAAATCACCAATCGATCGCTTAGAAAC
TGAATTGCAATCGTTGGCGAAAGAAAAAGAAGTCGCAGTTGGTGCACAAGACTTTGAAAAAGCCGCTGCCATTCACGAAA
AAGAAATTATTGCTAAGGCTAAAATGGCTAAGCGCCAAGCAGCCGAACAAGAAAATGGTGTCCGGACAGATATTCAAGTC
CAACCAGAAGATATCGCACAAGTCGTTGCCCAATGGACGGGTGTGCCAGTCACTCAATTGCAACGTAAAGAAAGCGAACG
CTTGTTGCAACTTGAAAAAGTCTTGCATGAACGGGTTGTTGGCCAAGAAGAAGCGATTTCAGCTGTGGCCCGTGCAATTC
GTCGGGCCCGCAGTGGTTTGAAGGATCCTAAGCGCCCAATCGGTTCATTTATGTTCTTAGGCCCTACTGGGGTTGGGAAG
ACCGAATTGGCCAAAGCATTGGCAGAAGCCATGTTTGGGTCTGAAGACAACTTGATTCGGGTTGATATGTCAGAATACAT
GGAACGTTACAGTACGAGCCGGTTAGTCGGGGCAGCACCTGGTTACGTCGGTTATGACGAAGGTGGCCAATTAACTGAAA
AAGTCCGCAATAAACCTTATTCCGTTGTTCTTTTTGATGAAGTTGAAAAGGCTCATCCAGACGTCTTCAATATCTTGTTA
CAAGTCTTAGATGATGGCTATTTGACAGATTCTAAGGGTCGGAAAGTTGATTTCCGGAATACAATCATGATCATGACGTC
TAACTTAGGGGCAACAGCCTTACGTGATGACAAGTCAGTTGGTTTTGGGGTCAAAGATGTCACTGCCGATTACAAAGCAA
TGCAAGGCCGGATTTTGGAAGAATTGAAGAAGTCATTCCGCCCAGAATTCTTAAACCGAATCGATGAAACGGTGGTCTTC
CATTCATTAACACAACCTGAATTGCGTGAAATCGTCAAGATTATGTCCAAAGGCATCTTAAACCGCTTAGCGGAACAAGG
TGTCAAGATCAAGATGACTGCTGCAGCGATGGATGTTGTGGCTAAAGCCGGCTTTGATCCAGAATACGGTGCGCGCCCAA
TTCGTCGTGCATTACAAACGCAAGTTGAAGATCGCTTGAGTGAAGCCTTATTGGCTGGTGAAATCACGACTGATACACCA
GTGACAATTGGGGCTACCAAAGGTGAAATTACCATTAATAGTAAAAAAGAAAAAACAACTGTTAAATAA
ATGAATAATCTATTTACACCAAGTGCCAAAAACGTTTTAATGTTAGCGCAAGAACAAGCTAAGAAGTTTAATCATCATGC
ATTAGGGACGGAACATCTGTTATTAGCGCTCGTCCTCGAAAGCGAAGGGATTGCTGGGAACGCACTACGTGAACTCGGTG
TGACACCCACTGATGTCTTAGAAGAAATTGAACGCTTAACCGGTTATGGTAATTCAATCGTTGCCATGGGTGTGGGCGGC
TATTTGCCATACTCACCTAAAGCTAAACAAGTGCTAGATTTAGCGCGCGTTGAATCACAACAAGCTAACTCAGTCAAAAT
CGGGACGGCACACCTATTACTAGCGTTATTACGCGATGATGACATTATTGCGGCTCGTATTCTATTAAACTTAGGCCTCA
GTTTAGCCAAAACACGTCAATTATTACTCCAAAAGATGGGGATTGATGCTGCAACTGCTAAGAAACGCGCTAAAGCCAGT
GCTAAAAAGGTTGATCAAGAAGGCACGCCTACTTTGAATCAATTGGCACGCGATTTAACCCAAATGGCCCGCGAAAATCA
AATTGATCCAGTCGTTGGTCGTGATTCAGAAGTTAAACGACTCGTGCAAATCCTAGCACGTCGTTCTAAAAATAATCCCG
TTTTAGTTGGCGAACCCGGTGTCGGTAAAACAGCGATTGCTGAAGGCTTTGCCCAACGGATTATCAACGGTGATGTGCCA
AGCGACATGCAACAAAAACGGTTAATGATGCTTGATATGGGCTCATTAGTCGCTGGCACTAAGTATCGTGGGGAATTTGA
AGATCGTCTCAAGAAGATTATTGAAGAAATCCATGAAGATGGCCAAGTAATCCTCTTTATCGATGAATTGCATACCTTAA
TTGGTGCTGGTGGGGCAGAAGGCGCAATTGACGCCTCAAATATTTTGAAACCAGCCCTCGCCCGTGGCGAATTGCAATTA
ATCGGTGCAACAACACTTGATGAATACCAAAAATACATCGAAAAAGATGCAGCTCTAGAACGGCGCTTCGCGACGGTGAC
GGTTGATGAACCAACACCAGAAGATGCGGAACAAATCTTACGCGGGTTACGACCACGTTATGAAGAACATCACGGCATCA
CAATCTCTGATGAAGCATTACACGAAGCCGTTGTTTTAGCGAACCGTTATATCACAAACCGTTTCTTACCTGATAAGGCA
ATTGATTTGATGGATGAGGCGGCTGCAAAGGTCAGATTAGATGCTGTTAACCAAAAATCACCAATCGATCGCTTAGAAAC
TGAATTGCAATCGTTGGCGAAAGAAAAAGAAGTCGCAGTTGGTGCACAAGACTTTGAAAAAGCCGCTGCCATTCACGAAA
AAGAAATTATTGCTAAGGCTAAAATGGCTAAGCGCCAAGCAGCCGAACAAGAAAATGGTGTCCGGACAGATATTCAAGTC
CAACCAGAAGATATCGCACAAGTCGTTGCCCAATGGACGGGTGTGCCAGTCACTCAATTGCAACGTAAAGAAAGCGAACG
CTTGTTGCAACTTGAAAAAGTCTTGCATGAACGGGTTGTTGGCCAAGAAGAAGCGATTTCAGCTGTGGCCCGTGCAATTC
GTCGGGCCCGCAGTGGTTTGAAGGATCCTAAGCGCCCAATCGGTTCATTTATGTTCTTAGGCCCTACTGGGGTTGGGAAG
ACCGAATTGGCCAAAGCATTGGCAGAAGCCATGTTTGGGTCTGAAGACAACTTGATTCGGGTTGATATGTCAGAATACAT
GGAACGTTACAGTACGAGCCGGTTAGTCGGGGCAGCACCTGGTTACGTCGGTTATGACGAAGGTGGCCAATTAACTGAAA
AAGTCCGCAATAAACCTTATTCCGTTGTTCTTTTTGATGAAGTTGAAAAGGCTCATCCAGACGTCTTCAATATCTTGTTA
CAAGTCTTAGATGATGGCTATTTGACAGATTCTAAGGGTCGGAAAGTTGATTTCCGGAATACAATCATGATCATGACGTC
TAACTTAGGGGCAACAGCCTTACGTGATGACAAGTCAGTTGGTTTTGGGGTCAAAGATGTCACTGCCGATTACAAAGCAA
TGCAAGGCCGGATTTTGGAAGAATTGAAGAAGTCATTCCGCCCAGAATTCTTAAACCGAATCGATGAAACGGTGGTCTTC
CATTCATTAACACAACCTGAATTGCGTGAAATCGTCAAGATTATGTCCAAAGGCATCTTAAACCGCTTAGCGGAACAAGG
TGTCAAGATCAAGATGACTGCTGCAGCGATGGATGTTGTGGCTAAAGCCGGCTTTGATCCAGAATACGGTGCGCGCCCAA
TTCGTCGTGCATTACAAACGCAAGTTGAAGATCGCTTGAGTGAAGCCTTATTGGCTGGTGAAATCACGACTGATACACCA
GTGACAATTGGGGCTACCAAAGGTGAAATTACCATTAATAGTAAAAAAGAAAAAACAACTGTTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
56.934 |
100 |
0.569 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
54.823 |
99.635 |
0.546 |
| clpC | Streptococcus pneumoniae Rx1 |
49.817 |
99.635 |
0.496 |
| clpC | Streptococcus pneumoniae D39 |
49.817 |
99.635 |
0.496 |
| clpC | Streptococcus pneumoniae TIGR4 |
49.695 |
99.635 |
0.495 |
| clpC | Streptococcus thermophilus LMD-9 |
47.867 |
100 |
0.491 |
| clpC | Streptococcus thermophilus LMG 18311 |
47.251 |
100 |
0.491 |
| clpC | Streptococcus mutans UA159 |
47.976 |
100 |
0.49 |
| clpE | Streptococcus pneumoniae Rx1 |
49.005 |
79.44 |
0.389 |
| clpE | Streptococcus pneumoniae D39 |
49.005 |
79.44 |
0.389 |
| clpE | Streptococcus pneumoniae R6 |
49.005 |
79.44 |
0.389 |
| clpE | Streptococcus pneumoniae TIGR4 |
49.005 |
79.44 |
0.389 |
| clpE | Streptococcus mutans UA159 |
49.763 |
77.007 |
0.383 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.035 |
75.669 |
0.371 |