Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   QTN45_RS01830 Genome accession   NZ_CP128500
Coordinates   354781..355926 (-) Length   381 a.a.
NCBI ID   WP_079979768.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 349781..360926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS01785 (QTN45_01785) speE 350092..350922 (+) 831 WP_003151052.1 spermidine synthase -
  QTN45_RS01790 (QTN45_01790) speB 350982..351854 (+) 873 WP_101670746.1 agmatinase -
  QTN45_RS01795 (QTN45_01795) - 352007..352225 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  QTN45_RS01800 (QTN45_01800) - 352816..353328 (-) 513 WP_014419132.1 stage II sporulation protein M -
  QTN45_RS01805 (QTN45_01805) - 353372..353791 (-) 420 WP_289412731.1 hypothetical protein -
  QTN45_RS01810 (QTN45_01810) - 353840..354025 (-) 186 WP_014419130.1 DUF4177 domain-containing protein -
  QTN45_RS01815 (QTN45_01815) - 354060..354263 (-) 204 WP_007407641.1 hypothetical protein -
  QTN45_RS01820 (QTN45_01820) - 354277..354480 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  QTN45_RS01825 (QTN45_01825) - 354678..354797 (-) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  QTN45_RS01830 (QTN45_01830) rapF 354781..355926 (-) 1146 WP_079979768.1 tetratricopeptide repeat protein Regulator
  QTN45_RS01835 (QTN45_01835) - 356218..356646 (+) 429 WP_003151069.1 DUF1934 family protein -
  QTN45_RS01840 (QTN45_01840) argS 356643..358313 (+) 1671 WP_017418711.1 arginine--tRNA ligase -
  QTN45_RS01845 (QTN45_01845) - 358448..359638 (+) 1191 WP_289412739.1 nitrate/nitrite transporter -
  QTN45_RS01850 (QTN45_01850) fnr 359736..360452 (+) 717 WP_017418713.1 fumarate/nitrate reduction transcriptional regulator Fnr -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45595.67 Da        Isoelectric Point: 4.5826

>NTDB_id=847742 QTN45_RS01830 WP_079979768.1 354781..355926(-) (rapF) [Bacillus amyloliquefaciens strain SRCM123364]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=847742 QTN45_RS01830 WP_079979768.1 354781..355926(-) (rapF) [Bacillus amyloliquefaciens strain SRCM123364]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCTATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57