Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V4U93_RS07045 Genome accession   NZ_CP144755
Coordinates   1390572..1392884 (-) Length   770 a.a.
NCBI ID   WP_025016402.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1385572..1397884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS07020 (V4U93_07020) - 1386707..1388452 (-) 1746 WP_025016406.1 ABC transporter transmembrane domain-containing protein -
  V4U93_RS07025 (V4U93_07025) - 1388594..1388824 (-) 231 WP_011374970.1 YneF family protein -
  V4U93_RS07030 (V4U93_07030) - 1388905..1389147 (-) 243 WP_011374971.1 DUF896 domain-containing protein -
  V4U93_RS07035 (V4U93_07035) dinR/lexA 1389282..1389896 (+) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  V4U93_RS07040 (V4U93_07040) - 1390030..1390548 (-) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  V4U93_RS07045 (V4U93_07045) recJ 1390572..1392884 (-) 2313 WP_025016402.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V4U93_RS07050 (V4U93_07050) galE 1393029..1394021 (+) 993 WP_061827025.1 UDP-glucose 4-epimerase GalE -
  V4U93_RS07055 (V4U93_07055) - 1394107..1394472 (+) 366 WP_011374976.1 DUF1304 domain-containing protein -
  V4U93_RS07060 (V4U93_07060) - 1394489..1394815 (+) 327 WP_011374977.1 heavy metal-binding domain-containing protein -
  V4U93_RS07065 (V4U93_07065) - 1394866..1396584 (-) 1719 WP_061827024.1 WxL domain-containing protein -
  V4U93_RS07070 (V4U93_07070) - 1396574..1396969 (-) 396 WP_016265361.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 770 a.a.        Molecular weight: 84839.63 Da        Isoelectric Point: 4.5390

>NTDB_id=847736 V4U93_RS07045 WP_025016402.1 1390572..1392884(-) (recJ) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MEAQYEWQLKPVPTEDELQTITKDNPLPKAAAQLLWQRGLRDAEQINDFMNPNVGQLHDPYALHDMQKAIDRIQEAIVNG
EKITIYGDYDADGITSTTLMKETLDDLGADVEVYVPNRFKDGYGPNLEAYKRLIENGTQLIVTVDNGVSGLEPIAYAQEH
GVDVVVTDHHELPSELPNAVAIVHPRHPEGQYPFGELCGVGVAFKVATALLEEIPYDKLDLAAIGTVCDIVPLVDENRTL
VSLGLQQLQNTDRPGLVALCQSAGLEQATLDATNIGFGIGPRLNAIGRLGDATLGVQLLTTLDDEEAVEQAQFIEQQNKK
RQGLVQEITATAMTIAETPENQASATLVIAHEGWHEGVLGIVASHVVEQTGKPTLVLTIDPETGLAKGSGRSVTAFHLFK
ALDAHRELLVHFGGHHMAVGLTAKVDQLALIQTAMNEYAQVNQLDLTGRQPLPVDLALTLADITPDLYQALQQLAPFGSD
NPEPLIELSAPQLADVKQIGADQKHLKMMAVDQQQQLAVLAFNKGALMPDLTAAEDVKLVGSLSENTWRGQTTLQLMVKD
LATSGQVVLDQRSNRLTKQLFQSTGDYVFFNDKMREQLQSYLPAGSQALLATDEQVATSQELIVVDEPADLTAFEQFYQQ
QQAAKLSLIFYAKHSAYLEGMPTKQQFATFLVYLRKHPNIEKARLAELAAYLKLQLPLMIFMLQVFFDLGFVRIERGLIT
AELQPEKHALESAPSYQKRLAKIEMEKQLVYSTFTEVKDWLATLPAVANR

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=847736 V4U93_RS07045 WP_025016402.1 1390572..1392884(-) (recJ) [Latilactobacillus sakei subsp. sakei strain DCF0720]
TTGGAAGCACAATATGAATGGCAATTAAAACCAGTACCAACTGAAGATGAATTACAAACAATTACAAAAGACAATCCGCT
ACCCAAGGCTGCGGCCCAACTTTTGTGGCAACGTGGCTTGCGGGATGCAGAGCAGATCAATGATTTTATGAATCCCAATG
TCGGTCAACTTCACGATCCATACGCTTTGCATGATATGCAAAAGGCGATTGATCGAATTCAAGAAGCGATTGTGAACGGC
GAAAAAATTACGATTTATGGCGATTATGACGCGGACGGGATCACAAGTACCACTTTGATGAAGGAAACTTTAGACGACTT
AGGTGCCGATGTTGAAGTCTATGTGCCTAATCGTTTTAAGGATGGCTACGGGCCTAATTTAGAAGCTTATAAACGCTTGA
TTGAAAATGGCACCCAATTAATTGTGACCGTCGATAACGGGGTGAGTGGCTTAGAACCAATCGCTTATGCGCAAGAACAC
GGTGTTGACGTGGTCGTGACCGATCACCATGAATTACCATCAGAATTACCCAACGCAGTGGCGATTGTGCATCCCAGACA
TCCAGAAGGGCAATATCCTTTTGGCGAACTCTGTGGGGTCGGTGTGGCGTTTAAAGTGGCGACTGCTTTATTAGAAGAGA
TTCCTTACGATAAATTAGATTTAGCCGCAATCGGGACGGTTTGTGATATCGTCCCCCTAGTTGATGAAAACCGGACATTG
GTTAGTTTAGGCTTACAACAATTACAAAATACCGATCGACCAGGTTTGGTCGCATTGTGTCAATCAGCTGGCTTAGAACA
AGCGACACTAGATGCCACTAACATTGGCTTTGGGATTGGTCCCCGTTTAAACGCAATTGGTCGTTTAGGTGATGCAACTC
TTGGTGTGCAACTATTGACGACGCTTGATGACGAAGAAGCAGTCGAGCAGGCCCAATTTATTGAACAACAAAATAAAAAA
CGCCAAGGTCTAGTGCAAGAAATTACGGCAACGGCAATGACAATTGCTGAAACACCGGAAAACCAAGCGAGTGCCACCTT
AGTTATTGCCCACGAAGGTTGGCATGAAGGGGTTCTAGGGATTGTGGCTAGTCATGTTGTTGAACAGACCGGTAAACCAA
CCTTAGTCTTGACGATTGACCCGGAAACTGGTTTAGCTAAAGGCTCTGGCCGTAGTGTGACAGCTTTCCATTTATTTAAA
GCGTTAGATGCCCACCGTGAATTATTGGTTCATTTTGGTGGCCATCACATGGCAGTTGGCTTGACTGCTAAGGTTGATCA
ATTAGCGCTGATTCAAACTGCAATGAACGAGTATGCGCAAGTTAATCAGTTAGATTTAACGGGACGCCAACCATTACCAG
TTGATTTGGCGCTGACGTTGGCTGATATTACACCTGATTTATATCAAGCATTGCAACAACTGGCACCGTTTGGCAGTGAT
AATCCAGAACCGTTAATCGAACTTAGCGCGCCCCAGTTGGCCGATGTCAAACAAATCGGTGCTGATCAGAAACATTTGAA
GATGATGGCGGTCGATCAACAACAACAATTAGCGGTTTTAGCTTTCAATAAAGGGGCTTTGATGCCCGATTTAACTGCCG
CTGAAGATGTGAAATTAGTCGGGAGTTTGAGTGAGAATACTTGGCGTGGCCAGACGACGTTGCAATTAATGGTAAAAGAC
CTTGCTACAAGTGGGCAAGTCGTACTTGATCAACGCAGCAATCGCCTGACAAAACAATTATTCCAATCAACAGGCGACTA
CGTCTTTTTTAATGATAAAATGCGCGAGCAACTGCAGTCTTATTTACCGGCAGGGAGTCAGGCGCTGTTAGCGACCGATG
AACAAGTTGCCACAAGCCAAGAGTTGATTGTGGTCGATGAACCAGCTGATTTAACTGCTTTTGAACAATTTTATCAACAA
CAACAGGCTGCTAAATTAAGCTTAATTTTTTATGCCAAACACTCTGCTTACTTAGAAGGAATGCCGACAAAACAACAGTT
TGCGACCTTCTTAGTTTACTTACGGAAGCATCCGAACATTGAAAAAGCGCGGTTAGCTGAATTAGCAGCGTATTTAAAAT
TACAATTACCGTTAATGATTTTCATGTTGCAGGTGTTTTTTGACCTCGGATTTGTTAGAATAGAACGTGGTCTGATTACG
GCCGAGTTACAACCTGAAAAGCATGCACTGGAAAGTGCACCAAGTTATCAAAAACGATTAGCTAAAATTGAAATGGAAAA
ACAGCTTGTTTATTCAACCTTTACCGAGGTGAAAGACTGGCTAGCAACTCTCCCAGCAGTAGCAAATCGCTAA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-761)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(454-560)

DHHA1 domain (DHHA1)

(318-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

40.604

98.831

0.401
  recJ Bacillus subtilis subsp. subtilis str. 168

37.371

100

0.377