Detailed information NTG0084773

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMG97_RS19840
• Genome accession: NZ_AP027197
• Coordinates: 3774191..3775183 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 02E060
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3769191..3780183

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMG97_RS19815 (F02E060_3791)	ygbN	3769846..3771210 (+)	1365	WP_000104439.1	GntP family transporter	-
QMG97_RS19820 (F02E060_3792)	-	3771249..3771485 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QMG97_RS19825 (F02E060_3793)	-	3771496..3772923 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QMG97_RS19830 (F02E060_3794)	-	3772923..3773516 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QMG97_RS19835 (F02E060_3795)	-	3773663..3774070 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
QMG97_RS19840 (F02E060_3796)	rpoS	3774191..3775183 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QMG97_RS19845 (F02E060_3797)	nlpD	3775246..3776340 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QMG97_RS19850 (F02E060_3798)	pcm	3776525..3777151 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QMG97_RS19855 (F02E060_3799)	surE	3777145..3777906 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QMG97_RS19860 (F02E060_3800)	truD	3777887..3778936 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
QMG97_RS19865 (F02E060_3801)	ispF	3778933..3779412 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMG97_RS19870 (F02E060_3802)	ispD	3779412..3780122 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=84773 QMG97_RS19840 WP_000081550.1 3774191..3775183(-) (rpoS) [Escherichia coli strain 02E060]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=84773 QMG97_RS19840 WP_000081550.1 3774191..3775183(-) (rpoS) [Escherichia coli strain 02E060]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715