Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   V4U93_RS05565 Genome accession   NZ_CP144755
Coordinates   1108940..1110385 (-) Length   481 a.a.
NCBI ID   WP_056936413.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103940..1115385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS05540 (V4U93_05540) - 1104106..1104381 (-) 276 WP_011374717.1 HU family DNA-binding protein -
  V4U93_RS05545 (V4U93_05545) der 1104588..1105898 (-) 1311 WP_016265173.1 ribosome biogenesis GTPase Der -
  V4U93_RS05550 (V4U93_05550) rpsA 1106132..1107343 (-) 1212 WP_025015758.1 30S ribosomal protein S1 -
  V4U93_RS05555 (V4U93_05555) cmk 1107438..1108097 (-) 660 WP_025015757.1 (d)CMP kinase -
  V4U93_RS05560 (V4U93_05560) - 1108164..1108871 (-) 708 WP_025015756.1 LysM domain-containing protein -
  V4U93_RS05565 (V4U93_05565) recS 1108940..1110385 (-) 1446 WP_056936413.1 RecQ family ATP-dependent DNA helicase Machinery gene
  V4U93_RS05570 (V4U93_05570) - 1110382..1111410 (-) 1029 WP_025015755.1 helix-turn-helix domain-containing protein -
  V4U93_RS05575 (V4U93_05575) - 1111447..1111677 (+) 231 WP_016265179.1 ferredoxin -
  V4U93_RS05580 (V4U93_05580) - 1111753..1112328 (-) 576 WP_016265180.1 ECF transporter S component -
  V4U93_RS05585 (V4U93_05585) - 1112644..1113414 (-) 771 WP_011374726.1 pseudouridine synthase -
  V4U93_RS05590 (V4U93_05590) scpB 1113417..1114040 (-) 624 WP_016265182.1 SMC-Scp complex subunit ScpB -
  V4U93_RS05595 (V4U93_05595) - 1114024..1114779 (-) 756 WP_035145834.1 segregation/condensation protein A -
  V4U93_RS05600 (V4U93_05600) - 1114788..1115156 (-) 369 WP_016265184.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54580.37 Da        Isoelectric Point: 5.2839

>NTDB_id=847718 V4U93_RS05565 WP_056936413.1 1108940..1110385(-) (recS) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIQSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKYQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAT
IKAQLRPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLASLVQKSQGPGIIYFSS
RQKTMEIAAFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRYVIHYHLPQNIESYLQEI
GRAGRDGQPAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGNEFELLRRYQQLGMTEEEVIKLLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLDLEQAINYKTAETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=847718 V4U93_RS05565 WP_056936413.1 1108940..1110385(-) (recS) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTCAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACTGGGACTGGGAAGTCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTCGCCCAATTGAAT
TACCAAGGGGAAAAGCGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAATACCAGTTGTTGACGCATTTAGC
GGACTACCGCTTTATTTTTATGGCACCGGAGACTATCAGTCAACCGGAAGTGATTCAAGCGCTCCAACGTTGCCAAATTG
ATTTATTTGTGGTTGATGAGGCCCATTGTATTTCACAATGGGGGATTGATTTTAGACCGGACTATTTAGTTTTAGCAACC
ATCAAGGCCCAATTGCGGCCAACCGCAACATTGGCTTTGACGGCAACTGCCAATGATCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCAAAGAATCAATTTTTAGCCAGCTTAGTGCAAAAAAGCCAAGGTCCCGGGATTATTTATTTTTCAAGT
CGGCAAAAGACGATGGAGATTGCGGCCTTTTTGCAGCAAGAAACTGATCTGAAGATTGCGTATTACCACGCGGCGTTATC
AACCCAGGAGCGGTATTTGATTCAACAACAATTTATGCAAGGACAACTTGATTTGATTTGTACAACCAATGCTTTTGGGA
TGGGGATTAATAAGGCGGATATTCGCTATGTGATTCATTATCACCTGCCACAAAACATCGAAAGTTACTTGCAAGAAATC
GGACGGGCAGGTCGAGATGGGCAACCAGCCTATGCTTTAGTCCTAACAACTCCGCAAGATTTATATTTACAACAATCACT
CGTTTCATTTGGAATTCCGGAACCAGGCCTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
ATGAATTTGAACTACTACGTCGCTACCAGCAACTGGGGATGACCGAAGAAGAGGTCATTAAGTTATTGGATAATCGTCAA
ACCGAAAAGCAGTTTTCACTACAAACGATGCTGGATTATTTGACCCTCAAGGGCTGTCGACGGCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAGGCTATTAATTATAAAACCGCTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-326)

DEAD/DEAH box helicase (DEAD)

(22-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

42.257

93.971

0.397