Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   V4U93_RS03375 Genome accession   NZ_CP144755
Coordinates   672441..673169 (+) Length   242 a.a.
NCBI ID   WP_011374338.1    Uniprot ID   Q38XZ6
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 667441..678169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS03355 (V4U93_03355) - 669360..670328 (+) 969 WP_011374334.1 HD domain-containing protein -
  V4U93_RS03360 (V4U93_03360) - 670389..671297 (-) 909 WP_049762126.1 peptidylprolyl isomerase PrsA -
  V4U93_RS03365 (V4U93_03365) - 671463..671789 (-) 327 WP_011374336.1 YtxH domain-containing protein -
  V4U93_RS03370 (V4U93_03370) - 671792..672220 (-) 429 WP_105300118.1 HIT family protein -
  V4U93_RS03375 (V4U93_03375) pptA 672441..673169 (+) 729 WP_011374338.1 ABC transporter ATP-binding protein Regulator
  V4U93_RS03380 (V4U93_03380) - 673169..674371 (+) 1203 WP_338453840.1 ABC transporter permease -
  V4U93_RS03385 (V4U93_03385) - 674504..675298 (+) 795 WP_011374340.1 phosphotransferase family protein -
  V4U93_RS03390 (V4U93_03390) trmB 675503..676144 (+) 642 WP_011374341.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V4U93_RS03395 (V4U93_03395) - 676216..676542 (-) 327 WP_011374342.1 hypothetical protein -
  V4U93_RS03400 (V4U93_03400) - 676665..676985 (+) 321 WP_011374343.1 thioredoxin family protein -
  V4U93_RS03405 (V4U93_03405) ytpR 677004..677633 (+) 630 WP_105300117.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26944.29 Da        Isoelectric Point: 5.0678

>NTDB_id=847702 V4U93_RS03375 WP_011374338.1 672441..673169(+) (pptA) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MSLEINQLTGGYAHVPVLQEVSFTVPNQQVVGLIGLNGAGKSTTIKHIIGLLMPQKGTITLNGVTLQSNPDQYRQSMAYV
PETPVLYPELTLREHLELAMMAYDLDFEKTWAKAMVLLKKFRLDNKLDWFPVHFSKGMRQKVMIVNAFMTDADLFIIDEP
FTGLDPLAIHDLLDIIADKKAAGAAILMSTHILATAQQYADSFVLLNQGKVRTTGTLEELKAEFNMADANLDDIYLQMTK
EG

Nucleotide


Download         Length: 729 bp        

>NTDB_id=847702 V4U93_RS03375 WP_011374338.1 672441..673169(+) (pptA) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGAGTTTAGAAATTAACCAATTAACGGGTGGTTACGCCCACGTACCAGTGCTCCAAGAAGTAAGTTTTACGGTTCCCAA
TCAACAGGTTGTCGGCTTGATTGGCTTAAACGGGGCTGGTAAATCAACGACCATTAAACATATTATCGGATTATTAATGC
CGCAAAAGGGTACGATTACGCTTAATGGCGTCACGTTGCAATCTAATCCGGATCAATACCGCCAAAGTATGGCTTACGTG
CCGGAAACGCCAGTCCTTTATCCCGAGTTAACATTACGAGAACATCTGGAACTAGCGATGATGGCTTACGATTTAGATTT
CGAGAAGACTTGGGCCAAAGCAATGGTGTTATTGAAGAAGTTCCGACTCGACAATAAGCTGGACTGGTTCCCAGTTCATT
TTTCAAAAGGGATGCGTCAAAAAGTGATGATCGTCAACGCTTTTATGACTGACGCCGATTTATTCATCATTGATGAACCT
TTTACAGGTCTTGATCCACTCGCCATTCACGATTTATTGGACATTATTGCTGATAAAAAGGCGGCGGGGGCGGCTATTTT
GATGTCGACCCATATTTTGGCCACGGCGCAACAATACGCCGATTCTTTTGTCCTATTAAATCAAGGTAAGGTTCGAACAA
CTGGGACGCTTGAAGAACTGAAAGCAGAATTTAACATGGCAGATGCAAACTTAGATGATATCTATTTGCAAATGACGAAA
GAAGGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(18-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38XZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.983

98.347

0.57
  pptA Streptococcus thermophilus LMD-9

56.723

98.347

0.558