Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QSJ10_RS09995 Genome accession   NZ_CP128494
Coordinates   1843432..1845153 (-) Length   573 a.a.
NCBI ID   WP_033016445.1    Uniprot ID   Q6E1U4
Organism   Geobacillus stearothermophilus ATCC 12980     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838432..1850153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ10_RS09960 (QSJ10_09960) - 1839013..1839276 (-) 264 WP_230581370.1 hypothetical protein -
  QSJ10_RS09965 (QSJ10_09965) - 1839451..1839699 (+) 249 WP_053532193.1 DUF2627 domain-containing protein -
  QSJ10_RS09970 (QSJ10_09970) - 1839758..1840486 (-) 729 WP_033009425.1 glycerophosphodiester phosphodiesterase -
  QSJ10_RS09975 (QSJ10_09975) - 1840597..1840749 (+) 153 WP_064502501.1 YycC family protein -
  QSJ10_RS09980 (QSJ10_09980) spo0A 1840878..1841657 (-) 780 WP_033016446.1 sporulation transcription factor Spo0A -
  QSJ10_RS09985 (QSJ10_09985) spoIVB 1841948..1843244 (-) 1297 Protein_1893 SpoIVB peptidase -
  QSJ10_RS09995 (QSJ10_09995) recN 1843432..1845153 (-) 1722 WP_033016445.1 DNA repair protein RecN Machinery gene
  QSJ10_RS10000 (QSJ10_10000) argR 1845295..1845744 (-) 450 WP_033016443.1 transcriptional regulator ArgR -
  QSJ10_RS10005 (QSJ10_10005) - 1845825..1846673 (-) 849 WP_033009419.1 TlyA family RNA methyltransferase -
  QSJ10_RS10010 (QSJ10_10010) dxs 1846678..1848570 (-) 1893 WP_049624620.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QSJ10_RS10015 (QSJ10_10015) - 1848641..1848796 (+) 156 WP_172698511.1 hypothetical protein -
  QSJ10_RS10020 (QSJ10_10020) - 1848793..1849686 (-) 894 WP_033016440.1 polyprenyl synthetase family protein -
  QSJ10_RS10025 (QSJ10_10025) - 1849690..1849920 (-) 231 WP_033009414.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 63997.47 Da        Isoelectric Point: 4.9166

>NTDB_id=847694 QSJ10_RS09995 WP_033016445.1 1843432..1845153(-) (recN) [Geobacillus stearothermophilus ATCC 12980]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSSEFVRFGAEKAEIEGLFLLDDDRHPCCQK
CADIGVDVSDGMVVLRRDILASGKSICRINGKLVTTAVLRDIGSTLVDIHGQHEHQELMDPSRHLPLLDEFGGAETAAAL
ARYRALYEEREALVKKLKKLSENEQQMAHRLDLLTFQLREIEQAGLEIGEDERLMEEKVRIFNFQKIYQAIQHSYEALAG
EGRGLDSVGQAMGHLEDVAAMDAELKEAHEMVANSYYLLEEVMYRLRDQLEELEYDPMRLDAIESRLAEIQQLKRKYGAT
IADILQYAEAIAEEIETIENRDMHVHDLERQLADVTGKLLAEAKKVTSIRQAYARQLIERIQQELKDLYMEKTQFDIVFA
KREGPLDAPLVDGVPVKFAEDGIDVVEFYLSTNVGEPLKPLAKTASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRIASQSQVLCISHLPQVAAMADTHLLIVKETDGTRTKTAVKKLDEEEKVKEIGRMISGVEMTELTKQH
AKELLELAAKMKR

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=847694 QSJ10_RS09995 WP_033016445.1 1843432..1845153(-) (recN) [Geobacillus stearothermophilus ATCC 12980]
ATGCTCGCTGAACTGTCGATTAAAAATTTCGCGATTATCGAATCGCTCTCGTTGTCGTTTGATAAAGGGCTGACGGTGTT
GACGGGCGAAACAGGGGCCGGCAAGTCGATCATCATCGACGCCATTCATTTGCTCATCGGCGGGCGCGGTTCGTCTGAGT
TCGTCCGTTTCGGCGCAGAGAAGGCCGAAATCGAAGGGCTGTTTTTGCTTGATGACGACCGCCATCCATGCTGCCAAAAA
TGTGCGGACATTGGCGTTGATGTCAGCGATGGGATGGTGGTGCTCCGCCGCGACATTTTGGCGAGCGGCAAAAGCATCTG
CCGCATCAACGGCAAGCTCGTCACCACCGCCGTGCTGCGCGACATCGGTTCGACGCTCGTCGATATTCACGGTCAGCATG
AGCATCAAGAGCTGATGGATCCATCCCGCCATCTGCCGCTTCTCGATGAGTTTGGCGGTGCGGAAACGGCGGCGGCGCTG
GCGCGTTATCGCGCTCTGTATGAAGAGCGTGAAGCGTTGGTAAAAAAGTTGAAAAAGCTGAGTGAAAATGAGCAGCAAAT
GGCGCATCGGCTCGATTTGCTGACGTTTCAGCTGCGCGAAATCGAACAAGCCGGGCTCGAGATTGGCGAAGACGAGCGGC
TGATGGAAGAAAAAGTTAGGATTTTTAATTTTCAAAAAATTTATCAAGCCATTCAGCATAGCTACGAAGCGCTCGCCGGC
GAAGGACGCGGCTTGGATTCGGTCGGCCAGGCGATGGGCCATCTCGAGGACGTCGCCGCGATGGACGCGGAACTTAAAGA
GGCGCATGAAATGGTGGCCAACAGCTACTATTTGCTCGAGGAAGTCATGTATAGGCTGCGCGACCAACTTGAGGAGCTTG
AATACGACCCGATGCGGCTTGACGCCATTGAAAGCCGCCTCGCGGAAATCCAGCAATTAAAACGGAAGTACGGAGCGACG
ATCGCCGATATTTTGCAGTATGCCGAAGCGATCGCCGAAGAAATCGAGACGATTGAAAACCGCGACATGCATGTGCACGA
CCTCGAGCGGCAGCTTGCCGACGTGACCGGCAAATTGCTTGCCGAGGCGAAAAAGGTGACCAGCATCCGCCAGGCGTACG
CCCGGCAGCTGATTGAGCGCATTCAGCAAGAATTGAAAGATTTGTACATGGAAAAAACGCAGTTTGACATCGTCTTCGCC
AAACGCGAAGGCCCGCTCGACGCCCCACTGGTCGACGGCGTGCCGGTCAAATTTGCGGAAGACGGCATCGATGTTGTCGA
ATTTTACCTGTCGACGAACGTCGGCGAGCCGCTGAAGCCGCTTGCCAAAACTGCTTCAGGCGGCGAGCTGTCGCGCATTA
TGCTCGCATTGAAGACGATTTTTTCGAAACACCAAGGTGTGACATCAATTATTTTTGATGAAGTCGACACCGGCGTCAGC
GGCCGGGTCGCCCAGGCGATCGCCGAAAAAATTTACCGCATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCACCTGCC
GCAAGTCGCCGCCATGGCGGACACGCATCTGTTGATCGTGAAGGAAACGGACGGAACGCGGACCAAAACGGCCGTGAAAA
AGCTCGATGAGGAGGAGAAGGTGAAGGAAATCGGACGGATGATTTCCGGCGTGGAGATGACCGAACTGACGAAGCAGCAT
GCCAAAGAGCTGCTCGAGCTGGCGGCGAAAATGAAGCGATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6E1U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.847

100

0.62