Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QSJ10_RS03730 Genome accession   NZ_CP128494
Coordinates   692168..693991 (+) Length   607 a.a.
NCBI ID   WP_033015653.1    Uniprot ID   -
Organism   Geobacillus stearothermophilus ATCC 12980     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 687168..698991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ10_RS03710 (QSJ10_03710) - 687495..688154 (-) 660 WP_033015645.1 TerC family protein -
  QSJ10_RS03715 (QSJ10_03715) mecA 688365..689045 (+) 681 WP_033015647.1 adaptor protein MecA -
  QSJ10_RS03720 (QSJ10_03720) cls 689142..690650 (+) 1509 WP_049626046.1 cardiolipin synthase -
  QSJ10_RS03725 (QSJ10_03725) - 690840..692168 (+) 1329 WP_033015650.1 competence protein CoiA family protein -
  QSJ10_RS03730 (QSJ10_03730) pepF 692168..693991 (+) 1824 WP_033015653.1 oligoendopeptidase F Regulator
  QSJ10_RS03735 (QSJ10_03735) - 694005..694202 (-) 198 WP_011230324.1 hypothetical protein -
  QSJ10_RS03740 (QSJ10_03740) spxH 694629..695522 (-) 894 WP_033015657.1 ClpXP adapter protein SpxH -
  QSJ10_RS03745 (QSJ10_03745) - 695515..695928 (-) 414 WP_053532175.1 globin -
  QSJ10_RS03750 (QSJ10_03750) - 696031..696654 (-) 624 WP_053532176.1 lytic transglycosylase domain-containing protein -
  QSJ10_RS03755 (QSJ10_03755) - 696651..697241 (-) 591 WP_033015660.1 CYTH domain-containing protein -
  QSJ10_RS03760 (QSJ10_03760) - 697377..697754 (+) 378 WP_053532177.1 hypothetical protein -
  QSJ10_RS03765 (QSJ10_03765) - 697899..698537 (+) 639 WP_033010443.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70185.13 Da        Isoelectric Point: 5.0842

>NTDB_id=847685 QSJ10_RS03730 WP_033015653.1 692168..693991(+) (pepF) [Geobacillus stearothermophilus ATCC 12980]
MTVEEKKAKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKALIPKLGEYKGRLGESPEVLYEALQYQDDVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSDTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFHAVYHTYEKFQNTFA
STLAGTVKKHNFFARVRRYESARQAALDANNIPESVYDNLIATVHEHLPLLHRYVRLRKQVLGLDELHMYDLYTPLVQDV
KMDVTYEEAKQYMLDGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVHNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDHLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAETLTSLYYDLNKKYFGDEIVVDQEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMEQLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=847685 QSJ10_RS03730 WP_033015653.1 692168..693991(+) (pepF) [Geobacillus stearothermophilus ATCC 12980]
ATGACGGTGGAGGAAAAGAAAGCGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCCGTGGAAGAAACGTGGCGGCTTGA
GGACATTTTTCCTACCGATGACGCCTGGGAAGAAGAATTCAAACAAGTGAAGGCACTGATTCCAAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGCTGTATGAAGCATTGCAATACCAAGATGACGTATCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGATCAAGATACGACTAACTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCGATGAAGCGGTGCTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAAATTACGCGCCAGCGCCCGCACGTGCTGTCG
GCGGAAGAGGAGGCGATCTTGGCGCAGGCGGCCGAGGTGATGCAGGCGACATCCGACACGTTCAGCGCGTTGAACAACGC
TGATTTGACGTTTCCGACGATCATCGATGAAAACGGTGAGGAAGTCGAAGTCACGCACGGCCGGTTCATTCGCTTTTTAG
AAAGCACGGACCGCCGTGTCCGCCGCGATGCGTTCCATGCGGTGTACCATACGTACGAAAAGTTTCAAAACACGTTTGCC
AGCACGCTTGCCGGAACGGTGAAAAAACATAACTTTTTTGCCCGCGTCCGCCGTTATGAATCGGCGCGCCAAGCGGCGCT
CGATGCCAACAACATCCCGGAGAGCGTGTACGACAACTTGATTGCCACGGTTCATGAACATTTGCCGCTTTTGCATCGCT
ATGTGCGGCTGCGCAAACAAGTGTTGGGGCTTGACGAGCTCCATATGTATGACTTGTACACGCCGCTTGTGCAAGATGTG
AAAATGGACGTGACGTACGAGGAAGCGAAGCAATATATGCTTGACGGGCTGGCGCCGCTCGGCGAGGAGTATGTAGCGAT
CGTCAAAGAAGGGCTTGACAACCGTTGGGTCGATGTGCGCGAGAACAAAGGGAAGCGGAGCGGTGCGTATTCGTCGGGAG
CGTATGGCACCCATCCGTACATTTTGCTCAATTGGCAGGACAACGTTCACAACTTGTTTACGCTCGTCCATGAGTTTGGC
CACTCGGTCCATAGCTACTATACGCGCAAAACGCAGCCGTATCCGTACGCCCATTATTCGATTTTCGTCGCTGAAGTGGC
GTCAACGTGCAATGAAGCGCTCTTGAACGATCACTTGCTGAAAACGATTGATGATGAGAAGAAACGGTTGTACTTGTTGA
ACCATTATCTTGAGGGATTCCGCGGCACTGTCTTTCGGCAGACGATGTTTGCGGAATTCGAGCATCTGATCCACCTGAAG
GCGCAACAGGGCGAAGCGTTAACGGCTGAGACGCTCACCTCGCTTTATTATGATTTAAACAAAAAGTATTTTGGCGATGA
GATTGTGGTCGACCAAGAAATCGGCTTGGAATGGTCGCGCATTCCGCATTTTTATTACAACTATTATGTGTACCAATATG
CGACCGGCTTCAGCGCGGCAACAGCGCTCAGCAAACAAATCTTAGAGGAAGGCGAACCGGCGGTGAAACGGTACATTGAC
TTTTTAAAAGCCGGCAGCTCGGACTACCCAATCGAAGTGCTGAAAAAAGCCGGCGTTGATATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAGCAGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.771

97.694

0.506