Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | V4941_RS08615 | Genome accession | NZ_CP144736 |
| Coordinates | 1981631..1984195 (-) | Length | 854 a.a. |
| NCBI ID | WP_012699844.1 | Uniprot ID | C1DPJ2 |
| Organism | Azotobacter vinelandii DJ | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1976631..1989195
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V4941_RS08590 (V4941_08585) | - | 1977859..1978733 (+) | 875 | Protein_1681 | beta-glucosidase | - |
| V4941_RS08595 (V4941_08590) | - | 1978730..1980529 (+) | 1800 | WP_012699845.1 | ABC transporter ATP-binding protein | - |
| V4941_RS08615 (V4941_08610) | clpC | 1981631..1984195 (-) | 2565 | WP_012699844.1 | ATP-dependent chaperone ClpB | Regulator |
| V4941_RS08620 (V4941_08615) | pgeF | 1984368..1985096 (-) | 729 | WP_012699843.1 | peptidoglycan editing factor PgeF | - |
| V4941_RS08625 (V4941_08620) | rluD | 1985096..1986067 (-) | 972 | WP_041807510.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| V4941_RS08630 (V4941_08625) | - | 1986214..1987227 (+) | 1014 | WP_012699841.1 | outer membrane protein assembly factor BamD | - |
| V4941_RS08635 (V4941_08630) | - | 1987328..1988962 (-) | 1635 | WP_175555955.1 | NAD+ synthase | - |
| V4941_RS08640 (V4941_08635) | - | 1988961..1989182 (+) | 222 | WP_175555956.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 854 a.a. Molecular weight: 94923.51 Da Isoelectric Point: 5.1227
>NTDB_id=847622 V4941_RS08615 WP_012699844.1 1981631..1984195(-) (clpC) [Azotobacter vinelandii DJ]
MRIDRLTSKLQLALSDAQSVAVGLDHAAIEPLHLMQALLDQQGGSIRPLLMQVGFDINGLRQALSKELDQLPKLQNPTGD
VNLSQDLARLLNQADRLAQQKGDQFISSELVLLAALDGNTRLGKLLLGQGVSKKAIENAIGNLRGGQTVNDPNAEESRQA
LDKYCVDMTARAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDGLRDKRLLAL
DMGSLIAGAKFRGEFEERLKAVLNELAKQEGRVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHGVTITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASR
IRMEIDSKPEELDRLDRRLIQLKIEREALKKETDEATKKRLAKLEEDIAKLEREYADLEEIWKSEKAEVQGSAQIQQQLE
QAKLDLEAARRKGDLNRMAELQYGLIPELERKLASADGGQPRENQLLRNRVTDEEIAEVVSKWTGIPVAKMLEGEREKLL
KMEELLHQRVIGQNEAVTAVANAVRRSRAGLADPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEALVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLMDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFKNTVVVMTSNL
GSAQIQELAGDREAQRAAVMDAVSHHFRPEFINRIDEVVVFDPLAREQIAGIAEIQLKRLRQRLAERELSLELSDEALDK
LIAVGYDPVYGARPLKRAIQRWIENPLAQQILAGQFAPGAKIFARVEGDEIVFG
MRIDRLTSKLQLALSDAQSVAVGLDHAAIEPLHLMQALLDQQGGSIRPLLMQVGFDINGLRQALSKELDQLPKLQNPTGD
VNLSQDLARLLNQADRLAQQKGDQFISSELVLLAALDGNTRLGKLLLGQGVSKKAIENAIGNLRGGQTVNDPNAEESRQA
LDKYCVDMTARAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDGLRDKRLLAL
DMGSLIAGAKFRGEFEERLKAVLNELAKQEGRVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHGVTITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASR
IRMEIDSKPEELDRLDRRLIQLKIEREALKKETDEATKKRLAKLEEDIAKLEREYADLEEIWKSEKAEVQGSAQIQQQLE
QAKLDLEAARRKGDLNRMAELQYGLIPELERKLASADGGQPRENQLLRNRVTDEEIAEVVSKWTGIPVAKMLEGEREKLL
KMEELLHQRVIGQNEAVTAVANAVRRSRAGLADPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEALVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLMDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFKNTVVVMTSNL
GSAQIQELAGDREAQRAAVMDAVSHHFRPEFINRIDEVVVFDPLAREQIAGIAEIQLKRLRQRLAERELSLELSDEALDK
LIAVGYDPVYGARPLKRAIQRWIENPLAQQILAGQFAPGAKIFARVEGDEIVFG
Nucleotide
Download Length: 2565 bp
>NTDB_id=847622 V4941_RS08615 WP_012699844.1 1981631..1984195(-) (clpC) [Azotobacter vinelandii DJ]
ATGCGAATCGACCGATTGACCAGCAAACTGCAACTTGCCTTGTCCGATGCCCAGTCCGTGGCAGTCGGCCTCGACCACGC
CGCCATCGAGCCGCTACACCTGATGCAGGCGCTGCTCGATCAACAGGGGGGCTCGATCAGGCCGCTCCTGATGCAGGTCG
GCTTCGATATCAACGGCCTGCGCCAGGCTCTGAGCAAGGAGCTGGATCAACTGCCCAAGCTGCAGAACCCCACTGGCGAC
GTGAATCTGTCCCAGGACCTGGCGCGTCTGCTCAACCAGGCGGACCGCTTGGCCCAGCAGAAGGGGGATCAGTTCATTTC
CAGCGAACTGGTGCTGCTCGCCGCGCTGGACGGCAACACCCGCCTGGGCAAGCTGCTGCTTGGCCAGGGCGTGTCGAAGA
AGGCTATCGAGAACGCCATCGGTAACCTGCGTGGCGGCCAGACGGTGAACGATCCGAATGCCGAGGAGTCCCGCCAGGCC
CTGGACAAGTACTGCGTCGACATGACCGCCCGGGCCGAGGAGGGCAAGCTCGACCCGGTGATCGGACGCGACGACGAGAT
CCGCCGCACCATCCAGGTGCTGCAGCGGCGTACCAAGAACAACCCGGTGCTGATCGGCGAGCCGGGTGTCGGCAAGACCG
CCATCGTCGAAGGCCTCGCCCAGCGCATCGTCAACGGCGAGGTGCCGGACGGACTCAGGGACAAGCGCCTGCTGGCGCTG
GACATGGGTTCGCTGATCGCCGGCGCCAAGTTCCGCGGCGAGTTCGAGGAGCGCCTGAAGGCCGTGCTCAACGAGCTGGC
CAAGCAGGAGGGGCGCGTCATCCTGTTCATCGACGAACTGCACACCATGGTCGGCGCCGGCAAGGCCGAAGGCGCCATGG
ATGCCGGCAACATGCTCAAGCCCGCTCTGGCGCGTGGCGAGCTGCATTGCGTCGGCGCCACCACCCTCGACGAGTACCGC
CAGTACATCGAGAAAGATGCCGCGCTGGAGCGCCGCTTCCAGAAGGTGCTGGTGGACGAGCCGAGCGAGGAGGACACCAT
CGCCATCCTGCGCGGCCTGAAGGAGCGCTACGAGGTGCACCATGGAGTGACCATCACCGACGGCGCCATCATCGCTGCGG
CCAAGCTGTCGCACCGCTACATCACCGACCGCCAACTGCCGGACAAGGCCATCGACCTGATCGACGAGGCGGCCAGCCGC
ATTCGCATGGAGATCGACTCCAAGCCCGAGGAACTGGATCGCCTGGATCGCCGGCTGATCCAGCTGAAGATCGAGCGTGA
GGCGCTGAAGAAGGAAACCGACGAGGCGACCAAAAAGCGCCTGGCCAAGTTGGAAGAGGACATCGCCAAGCTCGAGCGCG
AGTACGCCGACCTCGAGGAGATCTGGAAGTCGGAGAAGGCCGAGGTGCAGGGCTCGGCACAGATCCAGCAGCAATTGGAG
CAGGCCAAGCTGGATCTGGAGGCGGCACGCCGCAAGGGTGATCTGAACCGGATGGCCGAGCTGCAGTACGGTTTGATTCC
GGAGCTGGAGCGCAAGCTGGCCTCCGCCGACGGCGGGCAGCCGCGGGAGAACCAGTTGTTGCGCAATCGTGTCACCGACG
AGGAGATCGCCGAGGTGGTCTCCAAGTGGACCGGCATCCCGGTGGCCAAGATGCTCGAGGGCGAGCGCGAGAAGCTGCTG
AAGATGGAGGAGTTGCTGCATCAGCGGGTGATCGGCCAGAACGAGGCGGTGACCGCCGTGGCCAATGCGGTGCGGCGTTC
CCGCGCCGGGCTCGCCGATCCGAACCGGCCGAGCGGCTCCTTCCTGTTCCTCGGCCCGACCGGGGTCGGCAAGACCGAGC
TGTGCAAGGCGCTGGCCGAGTTCCTCTTCGATACCGAGGAGGCCCTGGTGCGCATCGACATGTCCGAGTTCATGGAGAAG
CACTCGGTAGCCCGCTTGATCGGCGCCCCTCCGGGGTATGTCGGCTATGAGGAGGGCGGCTACCTGACCGAGGCGGTGCG
CCGCAAGCCTTACTCCGTGGTGCTGATGGACGAGGTGGAAAAGGCTCACCCCGATGTGTTCAACATCCTTCTGCAGGTGC
TGGAGGACGGTCGTCTGACCGATAGCCACGGGCGTACCGTGGACTTCAAGAACACCGTGGTGGTGATGACTTCCAACCTT
GGTTCGGCGCAGATCCAGGAGCTGGCCGGCGATCGCGAGGCGCAGCGGGCGGCGGTGATGGATGCGGTAAGCCACCATTT
CCGGCCGGAGTTCATCAACCGCATCGACGAGGTGGTGGTATTCGACCCGCTGGCCCGCGAGCAGATCGCCGGCATCGCCG
AGATTCAGTTGAAGCGCCTGCGCCAGCGTCTGGCCGAGCGCGAGCTGAGCCTCGAACTTTCCGATGAGGCCCTGGACAAG
CTGATCGCCGTCGGTTACGACCCGGTCTACGGGGCACGGCCCCTGAAGCGGGCGATCCAGCGCTGGATCGAGAACCCGCT
GGCGCAGCAGATTCTCGCCGGGCAGTTCGCGCCTGGCGCGAAGATCTTCGCCAGGGTGGAGGGCGACGAGATCGTCTTTG
GCTGA
ATGCGAATCGACCGATTGACCAGCAAACTGCAACTTGCCTTGTCCGATGCCCAGTCCGTGGCAGTCGGCCTCGACCACGC
CGCCATCGAGCCGCTACACCTGATGCAGGCGCTGCTCGATCAACAGGGGGGCTCGATCAGGCCGCTCCTGATGCAGGTCG
GCTTCGATATCAACGGCCTGCGCCAGGCTCTGAGCAAGGAGCTGGATCAACTGCCCAAGCTGCAGAACCCCACTGGCGAC
GTGAATCTGTCCCAGGACCTGGCGCGTCTGCTCAACCAGGCGGACCGCTTGGCCCAGCAGAAGGGGGATCAGTTCATTTC
CAGCGAACTGGTGCTGCTCGCCGCGCTGGACGGCAACACCCGCCTGGGCAAGCTGCTGCTTGGCCAGGGCGTGTCGAAGA
AGGCTATCGAGAACGCCATCGGTAACCTGCGTGGCGGCCAGACGGTGAACGATCCGAATGCCGAGGAGTCCCGCCAGGCC
CTGGACAAGTACTGCGTCGACATGACCGCCCGGGCCGAGGAGGGCAAGCTCGACCCGGTGATCGGACGCGACGACGAGAT
CCGCCGCACCATCCAGGTGCTGCAGCGGCGTACCAAGAACAACCCGGTGCTGATCGGCGAGCCGGGTGTCGGCAAGACCG
CCATCGTCGAAGGCCTCGCCCAGCGCATCGTCAACGGCGAGGTGCCGGACGGACTCAGGGACAAGCGCCTGCTGGCGCTG
GACATGGGTTCGCTGATCGCCGGCGCCAAGTTCCGCGGCGAGTTCGAGGAGCGCCTGAAGGCCGTGCTCAACGAGCTGGC
CAAGCAGGAGGGGCGCGTCATCCTGTTCATCGACGAACTGCACACCATGGTCGGCGCCGGCAAGGCCGAAGGCGCCATGG
ATGCCGGCAACATGCTCAAGCCCGCTCTGGCGCGTGGCGAGCTGCATTGCGTCGGCGCCACCACCCTCGACGAGTACCGC
CAGTACATCGAGAAAGATGCCGCGCTGGAGCGCCGCTTCCAGAAGGTGCTGGTGGACGAGCCGAGCGAGGAGGACACCAT
CGCCATCCTGCGCGGCCTGAAGGAGCGCTACGAGGTGCACCATGGAGTGACCATCACCGACGGCGCCATCATCGCTGCGG
CCAAGCTGTCGCACCGCTACATCACCGACCGCCAACTGCCGGACAAGGCCATCGACCTGATCGACGAGGCGGCCAGCCGC
ATTCGCATGGAGATCGACTCCAAGCCCGAGGAACTGGATCGCCTGGATCGCCGGCTGATCCAGCTGAAGATCGAGCGTGA
GGCGCTGAAGAAGGAAACCGACGAGGCGACCAAAAAGCGCCTGGCCAAGTTGGAAGAGGACATCGCCAAGCTCGAGCGCG
AGTACGCCGACCTCGAGGAGATCTGGAAGTCGGAGAAGGCCGAGGTGCAGGGCTCGGCACAGATCCAGCAGCAATTGGAG
CAGGCCAAGCTGGATCTGGAGGCGGCACGCCGCAAGGGTGATCTGAACCGGATGGCCGAGCTGCAGTACGGTTTGATTCC
GGAGCTGGAGCGCAAGCTGGCCTCCGCCGACGGCGGGCAGCCGCGGGAGAACCAGTTGTTGCGCAATCGTGTCACCGACG
AGGAGATCGCCGAGGTGGTCTCCAAGTGGACCGGCATCCCGGTGGCCAAGATGCTCGAGGGCGAGCGCGAGAAGCTGCTG
AAGATGGAGGAGTTGCTGCATCAGCGGGTGATCGGCCAGAACGAGGCGGTGACCGCCGTGGCCAATGCGGTGCGGCGTTC
CCGCGCCGGGCTCGCCGATCCGAACCGGCCGAGCGGCTCCTTCCTGTTCCTCGGCCCGACCGGGGTCGGCAAGACCGAGC
TGTGCAAGGCGCTGGCCGAGTTCCTCTTCGATACCGAGGAGGCCCTGGTGCGCATCGACATGTCCGAGTTCATGGAGAAG
CACTCGGTAGCCCGCTTGATCGGCGCCCCTCCGGGGTATGTCGGCTATGAGGAGGGCGGCTACCTGACCGAGGCGGTGCG
CCGCAAGCCTTACTCCGTGGTGCTGATGGACGAGGTGGAAAAGGCTCACCCCGATGTGTTCAACATCCTTCTGCAGGTGC
TGGAGGACGGTCGTCTGACCGATAGCCACGGGCGTACCGTGGACTTCAAGAACACCGTGGTGGTGATGACTTCCAACCTT
GGTTCGGCGCAGATCCAGGAGCTGGCCGGCGATCGCGAGGCGCAGCGGGCGGCGGTGATGGATGCGGTAAGCCACCATTT
CCGGCCGGAGTTCATCAACCGCATCGACGAGGTGGTGGTATTCGACCCGCTGGCCCGCGAGCAGATCGCCGGCATCGCCG
AGATTCAGTTGAAGCGCCTGCGCCAGCGTCTGGCCGAGCGCGAGCTGAGCCTCGAACTTTCCGATGAGGCCCTGGACAAG
CTGATCGCCGTCGGTTACGACCCGGTCTACGGGGCACGGCCCCTGAAGCGGGCGATCCAGCGCTGGATCGAGAACCCGCT
GGCGCAGCAGATTCTCGCCGGGCAGTTCGCGCCTGGCGCGAAGATCTTCGCCAGGGTGGAGGGCGACGAGATCGTCTTTG
GCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
47.777 |
100 |
0.491 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
42.166 |
100 |
0.429 |
| clpE | Streptococcus mutans UA159 |
48.22 |
78.923 |
0.381 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
46.957 |
80.796 |
0.379 |
| clpE | Streptococcus pneumoniae TIGR4 |
46.569 |
80.211 |
0.374 |
| clpE | Streptococcus pneumoniae Rx1 |
46.423 |
80.211 |
0.372 |
| clpE | Streptococcus pneumoniae D39 |
46.423 |
80.211 |
0.372 |
| clpE | Streptococcus pneumoniae R6 |
46.423 |
80.211 |
0.372 |