Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QTL56_RS01775 Genome accession   NZ_CP128477
Coordinates   341482..342885 (-) Length   467 a.a.
NCBI ID   WP_229575813.1    Uniprot ID   -
Organism   Peteryoungia algae strain SSM4.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 336482..347885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTL56_RS01755 - 337381..338259 (-) 879 WP_245137512.1 DMT family transporter -
  QTL56_RS01760 - 338315..339055 (-) 741 WP_245137511.1 SDR family NAD(P)-dependent oxidoreductase -
  QTL56_RS01765 purF 339182..340672 (-) 1491 WP_229575811.1 amidophosphoribosyltransferase -
  QTL56_RS01770 - 340797..341393 (-) 597 WP_245137510.1 CvpA family protein -
  QTL56_RS01775 radA 341482..342885 (-) 1404 WP_229575813.1 DNA repair protein RadA Machinery gene
  QTL56_RS01780 - 342886..343206 (-) 321 WP_245137509.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QTL56_RS01785 - 343203..343493 (-) 291 WP_245137508.1 type II toxin-antitoxin system ParD family antitoxin -
  QTL56_RS01790 alr 343546..344712 (-) 1167 WP_245137507.1 alanine racemase -
  QTL56_RS01795 - 344797..345660 (+) 864 WP_229575817.1 AraC family transcriptional regulator -
  QTL56_RS01800 - 345730..346431 (+) 702 WP_245137506.1 AzlC family ABC transporter permease -
  QTL56_RS01805 - 346428..346730 (+) 303 WP_245137505.1 AzlD family protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 49155.16 Da        Isoelectric Point: 6.9559

>NTDB_id=847591 QTL56_RS01775 WP_229575813.1 341482..342885(-) (radA) [Peteryoungia algae strain SSM4.3]
MAKAKTQFVCQNCGTVHSRWAGKCDGCGEWNTIVEEDPMGGIGSGPGKAPKKGRAVTLTALSGEIEEAPRIPTGMGELDR
ATGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGAADTDVLLAAETNVEDILAT
ISESKRPDLVIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRYAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDKGLREVANPSELFLGERNEKAPGAAVFAGMEGTRPVLVEVQALVAATSLG
TPRRAVVGWDSSRLAMILAVLEAHCGVRLGQHDVYLNVAGGYRIREPAADMAIASALVSSLAGLALPADCVYFGEVSLSG
AVRPVAHTAQRLKEAEKLGFSAAVLPAASPDLPKGSKGKWREVDSLPDLVARIAGSRLKAPADQEDG

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=847591 QTL56_RS01775 WP_229575813.1 341482..342885(-) (radA) [Peteryoungia algae strain SSM4.3]
ATGGCCAAAGCCAAGACCCAATTCGTCTGCCAGAACTGCGGCACGGTTCATTCCCGCTGGGCGGGCAAATGCGATGGCTG
CGGCGAGTGGAACACCATCGTCGAGGAAGATCCGATGGGCGGGATCGGCTCCGGCCCCGGCAAGGCGCCGAAGAAGGGGC
GTGCCGTTACGCTCACCGCGCTGTCGGGCGAGATCGAGGAGGCACCGCGTATTCCGACCGGCATGGGCGAACTCGATCGT
GCCACCGGCGGTGGTTTCGTCCGAGGTTCTGCCGTGCTGATTGGCGGCGATCCCGGCATCGGCAAATCGACGCTACTCAT
GCAGGCGGCGGCGGCCCTGTCGAGGCGCGGCCATCGCGTCATCTATGTGTCGGGCGAAGAGGCCGTGGCACAGGTTCGGC
TCAGGGCTCAGCGCCTCGGTGCAGCCGATACCGACGTGCTGCTCGCCGCCGAAACGAACGTCGAGGATATCCTTGCGACC
ATTTCGGAAAGCAAACGGCCGGATCTCGTCATCATCGATTCGATCCAGACGCTGTGGAGCGACACCGCCGACAGCGCGCC
GGGCACAGTGACCCAGGTGCGCACCGGCGTGCAGGCGATGATCCGATATGCCAAACAGACGGGCGCCACCATGGTCCTGG
TCGGGCACGTGACCAAGGAAGGCCAGATCGCCGGCCCCCGTGTCGTCGAACACATGGTCGACGCGGTCCTCTATTTCGAG
GGGGATCGCGGCCATCACTACCGCATCCTGCGCACGGTCAAGAACCGTTTCGGGCCGACGGATGAGATCGGCGTCTTCGA
AATGTCGGACAAGGGGTTGCGGGAAGTGGCCAATCCATCCGAGCTTTTCCTCGGCGAGCGCAACGAAAAGGCGCCCGGGG
CGGCCGTCTTCGCCGGCATGGAAGGCACGCGACCCGTGCTCGTCGAAGTGCAGGCGCTTGTGGCTGCGACATCACTCGGA
ACCCCTCGCCGCGCCGTCGTCGGTTGGGATTCGTCACGTCTCGCCATGATTTTGGCGGTATTGGAGGCGCATTGCGGGGT
CAGGCTCGGGCAGCATGACGTTTACCTGAACGTCGCCGGCGGCTACCGGATCCGTGAACCGGCGGCCGACATGGCGATTG
CTTCAGCACTGGTTTCATCGCTGGCCGGTCTTGCCCTTCCCGCCGATTGCGTCTATTTCGGCGAAGTCAGCCTGTCGGGG
GCAGTGAGGCCGGTGGCCCACACGGCCCAGAGGCTGAAAGAGGCGGAAAAGCTTGGTTTCTCCGCCGCGGTCTTGCCGGC
TGCCTCGCCGGACCTGCCGAAGGGTTCGAAGGGCAAATGGAGGGAAGTGGACAGCCTTCCCGATCTCGTGGCGCGGATCG
CCGGTTCCCGGCTGAAAGCCCCCGCAGATCAGGAGGACGGTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(85-221)

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.111

96.146

0.482
  radA Streptococcus pneumoniae Rx1

47.059

94.647

0.445
  radA Streptococcus pneumoniae D39

47.059

94.647

0.445
  radA Streptococcus pneumoniae R6

47.059

94.647

0.445
  radA Streptococcus pneumoniae TIGR4

47.059

94.647

0.445
  radA Streptococcus mitis SK321

47.235

92.934

0.439
  radA Streptococcus mitis NCTC 12261

47.005

92.934

0.437