Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QSV55_RS10785 Genome accession   NZ_CP128470
Coordinates   1977459..1978823 (-) Length   454 a.a.
NCBI ID   WP_289650173.1    Uniprot ID   -
Organism   Macrococcus bovicus strain LI0213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1972459..1983823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV55_RS10760 (QSV55_10785) cysE 1972902..1973543 (-) 642 WP_289650169.1 serine O-acetyltransferase -
  QSV55_RS10765 (QSV55_10790) gltX 1973770..1975224 (-) 1455 WP_289650170.1 glutamate--tRNA ligase -
  QSV55_RS10770 (QSV55_10795) ispF 1975240..1975719 (-) 480 WP_289650171.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QSV55_RS10775 (QSV55_10800) ispD 1975707..1976396 (-) 690 WP_289651080.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QSV55_RS10780 (QSV55_10805) - 1976393..1977445 (-) 1053 WP_289650172.1 TRAM domain-containing protein -
  QSV55_RS10785 (QSV55_10810) radA 1977459..1978823 (-) 1365 WP_289650173.1 DNA repair protein RadA Machinery gene
  QSV55_RS10790 (QSV55_10815) - 1978918..1981353 (-) 2436 WP_289650174.1 ATP-dependent Clp protease ATP-binding subunit -
  QSV55_RS10795 (QSV55_10820) - 1981367..1982371 (-) 1005 WP_289650175.1 protein arginine kinase -
  QSV55_RS10800 (QSV55_10825) - 1982361..1982741 (-) 381 WP_133452236.1 UvrB/UvrC motif-containing protein -
  QSV55_RS10805 (QSV55_10830) - 1982753..1983211 (-) 459 WP_133452237.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50058.64 Da        Isoelectric Point: 7.4115

>NTDB_id=847579 QSV55_RS10785 WP_289650173.1 1977459..1978823(-) (radA) [Macrococcus bovicus strain LI0213]
MAKTKVTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKAKGPKTTITDTSSSQKVEKLKDVTKETTPRSTTYIKEFDR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVCALLSQHDNVLYISGEESVRQTKLRADRLSEDAGELSVYAETNLQIIHETV
KKIEPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELLRMAKSMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMRQSGLKEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQALVTPTSFHNP
RRTSTGIDQNRLSLLMAVLEKKQGLLLQQQDAYIKVAGGVKLDEPAVDLSVVISIASSFSDKATRGDDCYIGEVGLTGEV
RRVARIEQRVQEAAKLGFKRVIIPKNNIGGWDFPPNIEILGITNIAEAIRIAFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=847579 QSV55_RS10785 WP_289650173.1 1977459..1978823(-) (radA) [Macrococcus bovicus strain LI0213]
TTGGCAAAAACGAAAGTAACATTTGAATGTATGGCTTGTGGTTACCAGTCGCCTAAATGGATGGGTAAATGTCCGAACTG
CGGGGCCTGGAATCAGATGGAAGAAGTCATTGAACATAAGGCCAAAGGACCGAAGACGACTATTACCGACACATCTTCCA
GTCAGAAGGTAGAGAAACTGAAGGATGTCACAAAAGAGACCACTCCGAGATCGACAACTTATATCAAAGAATTTGACCGT
GTGCTCGGGGGAGGCATCGTGCCCGGTTCATTGATTTTAATCGGCGGGGACCCGGGTATCGGTAAATCGACACTTCTGCT
GCAGGTCTGTGCACTTTTATCGCAGCATGACAATGTGCTTTATATTTCAGGGGAGGAATCTGTCCGTCAGACAAAACTTC
GTGCCGACCGCCTTAGTGAAGACGCGGGAGAACTCAGTGTCTATGCAGAGACCAATCTGCAGATCATCCATGAGACGGTG
AAGAAAATAGAGCCTAAATTCCTGGTGATTGATTCCATCCAGACGATATTCCATCCGGAAGTCACTTCAGCTCCGGGTTC
TGTCTCACAAGTCCGTGAATGTACGCAGGAGTTGCTGCGCATGGCGAAATCCATGAATATTGCCACCTTTATTGTCGGGC
ACGTGACGAAAGAAGGCCAGATTGCGGGCCCACGGCTACTCGAACATATGGTCGATACTGTTCTCTACTTCGAGGGCGAT
ACACACCATAGCTACCGGATACTGCGTGCTGTCAAGAACAGATTCGGTTCAACGAATGAAATGGGTATATTTGAGATGCG
TCAATCCGGTCTGAAAGAAGTGCTCAATCCTTCTGAAATGTTTCTGGAGGAACGGACGAAAAATGTCGCTGGTTCTACTA
TTGTCGCAACGATGGAAGGAACAAGACCGTTGCTTGTAGAAGTGCAGGCACTTGTTACACCGACTTCATTCCATAATCCG
CGCCGTACTTCAACAGGTATTGATCAGAACCGTCTGAGTCTGCTGATGGCTGTTCTCGAGAAGAAGCAGGGTCTCCTCCT
GCAGCAACAGGATGCTTATATCAAAGTAGCAGGCGGGGTCAAACTGGATGAGCCGGCTGTGGATCTGAGCGTCGTCATCA
GTATTGCTTCAAGTTTCAGCGACAAAGCAACACGCGGAGATGATTGTTATATCGGGGAAGTAGGGCTGACAGGGGAAGTC
AGACGGGTTGCACGTATAGAGCAGCGCGTACAGGAAGCGGCAAAGCTCGGGTTCAAACGTGTCATTATTCCGAAAAATAA
TATCGGCGGCTGGGATTTTCCGCCGAACATCGAAATTCTGGGTATTACTAATATTGCGGAAGCAATTAGAATTGCTTTTA
ATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(356-427)

AAA domain (AAA_25)

(81-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.958

100

0.674
  radA Streptococcus pneumoniae Rx1

61.589

99.78

0.615
  radA Streptococcus pneumoniae D39

61.589

99.78

0.615
  radA Streptococcus pneumoniae R6

61.589

99.78

0.615
  radA Streptococcus pneumoniae TIGR4

61.589

99.78

0.615
  radA Streptococcus mitis NCTC 12261

61.589

99.78

0.615
  radA Streptococcus mitis SK321

61.589

99.78

0.615