Detailed information NTG0847516

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V4939_RS04615
• Genome accession: NZ_CP144733
• Coordinates: 971174..973738 (+)
• Length: 854 a.a.
• NCBI ID: WP_012699844.1
• Uniprot ID: C1DPJ2
• Organism: Azotobacter vinelandii DJ
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 966174..978738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4939_RS04595 (V4939_04595)	-	966407..968041 (+)	1635	WP_175555955.1	NAD+ synthase	-
V4939_RS04600 (V4939_04600)	-	968142..969155 (-)	1014	WP_012699841.1	outer membrane protein assembly factor BamD	-
V4939_RS04605 (V4939_04605)	rluD	969302..970273 (+)	972	WP_041807510.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
V4939_RS04610 (V4939_04610)	pgeF	970273..971001 (+)	729	WP_012699843.1	peptidoglycan editing factor PgeF	-
V4939_RS04615 (V4939_04615)	clpC	971174..973738 (+)	2565	WP_012699844.1	ATP-dependent chaperone ClpB	Regulator
V4939_RS04635 (V4939_04635)	-	974840..976639 (-)	1800	WP_012699845.1	ABC transporter ATP-binding protein	-
V4939_RS04640 (V4939_04640)	-	976636..977510 (-)	875	Protein_910	beta-glucosidase	-

Sequence

Protein

• Length: 854 a.a.
• Molecular weight: 94923.51 Da
• Isoelectric Point: 5.1227

>NTDB_id=847516 V4939_RS04615 WP_012699844.1 971174..973738(+) (clpC) [Azotobacter vinelandii DJ]
MRIDRLTSKLQLALSDAQSVAVGLDHAAIEPLHLMQALLDQQGGSIRPLLMQVGFDINGLRQALSKELDQLPKLQNPTGD
VNLSQDLARLLNQADRLAQQKGDQFISSELVLLAALDGNTRLGKLLLGQGVSKKAIENAIGNLRGGQTVNDPNAEESRQA
LDKYCVDMTARAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDGLRDKRLLAL
DMGSLIAGAKFRGEFEERLKAVLNELAKQEGRVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHGVTITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASR
IRMEIDSKPEELDRLDRRLIQLKIEREALKKETDEATKKRLAKLEEDIAKLEREYADLEEIWKSEKAEVQGSAQIQQQLE
QAKLDLEAARRKGDLNRMAELQYGLIPELERKLASADGGQPRENQLLRNRVTDEEIAEVVSKWTGIPVAKMLEGEREKLL
KMEELLHQRVIGQNEAVTAVANAVRRSRAGLADPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEALVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLMDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFKNTVVVMTSNL
GSAQIQELAGDREAQRAAVMDAVSHHFRPEFINRIDEVVVFDPLAREQIAGIAEIQLKRLRQRLAERELSLELSDEALDK
LIAVGYDPVYGARPLKRAIQRWIENPLAQQILAGQFAPGAKIFARVEGDEIVFG

Nucleotide

• Length: 2565 bp

>NTDB_id=847516 V4939_RS04615 WP_012699844.1 971174..973738(+) (clpC) [Azotobacter vinelandii DJ]
ATGCGAATCGACCGATTGACCAGCAAACTGCAACTTGCCTTGTCCGATGCCCAGTCCGTGGCAGTCGGCCTCGACCACGC
CGCCATCGAGCCGCTACACCTGATGCAGGCGCTGCTCGATCAACAGGGGGGCTCGATCAGGCCGCTCCTGATGCAGGTCG
GCTTCGATATCAACGGCCTGCGCCAGGCTCTGAGCAAGGAGCTGGATCAACTGCCCAAGCTGCAGAACCCCACTGGCGAC
GTGAATCTGTCCCAGGACCTGGCGCGTCTGCTCAACCAGGCGGACCGCTTGGCCCAGCAGAAGGGGGATCAGTTCATTTC
CAGCGAACTGGTGCTGCTCGCCGCGCTGGACGGCAACACCCGCCTGGGCAAGCTGCTGCTTGGCCAGGGCGTGTCGAAGA
AGGCTATCGAGAACGCCATCGGTAACCTGCGTGGCGGCCAGACGGTGAACGATCCGAATGCCGAGGAGTCCCGCCAGGCC
CTGGACAAGTACTGCGTCGACATGACCGCCCGGGCCGAGGAGGGCAAGCTCGACCCGGTGATCGGACGCGACGACGAGAT
CCGCCGCACCATCCAGGTGCTGCAGCGGCGTACCAAGAACAACCCGGTGCTGATCGGCGAGCCGGGTGTCGGCAAGACCG
CCATCGTCGAAGGCCTCGCCCAGCGCATCGTCAACGGCGAGGTGCCGGACGGACTCAGGGACAAGCGCCTGCTGGCGCTG
GACATGGGTTCGCTGATCGCCGGCGCCAAGTTCCGCGGCGAGTTCGAGGAGCGCCTGAAGGCCGTGCTCAACGAGCTGGC
CAAGCAGGAGGGGCGCGTCATCCTGTTCATCGACGAACTGCACACCATGGTCGGCGCCGGCAAGGCCGAAGGCGCCATGG
ATGCCGGCAACATGCTCAAGCCCGCTCTGGCGCGTGGCGAGCTGCATTGCGTCGGCGCCACCACCCTCGACGAGTACCGC
CAGTACATCGAGAAAGATGCCGCGCTGGAGCGCCGCTTCCAGAAGGTGCTGGTGGACGAGCCGAGCGAGGAGGACACCAT
CGCCATCCTGCGCGGCCTGAAGGAGCGCTACGAGGTGCACCATGGAGTGACCATCACCGACGGCGCCATCATCGCTGCGG
CCAAGCTGTCGCACCGCTACATCACCGACCGCCAACTGCCGGACAAGGCCATCGACCTGATCGACGAGGCGGCCAGCCGC
ATTCGCATGGAGATCGACTCCAAGCCCGAGGAACTGGATCGCCTGGATCGCCGGCTGATCCAGCTGAAGATCGAGCGTGA
GGCGCTGAAGAAGGAAACCGACGAGGCGACCAAAAAGCGCCTGGCCAAGTTGGAAGAGGACATCGCCAAGCTCGAGCGCG
AGTACGCCGACCTCGAGGAGATCTGGAAGTCGGAGAAGGCCGAGGTGCAGGGCTCGGCACAGATCCAGCAGCAATTGGAG
CAGGCCAAGCTGGATCTGGAGGCGGCACGCCGCAAGGGTGATCTGAACCGGATGGCCGAGCTGCAGTACGGTTTGATTCC
GGAGCTGGAGCGCAAGCTGGCCTCCGCCGACGGCGGGCAGCCGCGGGAGAACCAGTTGTTGCGCAATCGTGTCACCGACG
AGGAGATCGCCGAGGTGGTCTCCAAGTGGACCGGCATCCCGGTGGCCAAGATGCTCGAGGGCGAGCGCGAGAAGCTGCTG
AAGATGGAGGAGTTGCTGCATCAGCGGGTGATCGGCCAGAACGAGGCGGTGACCGCCGTGGCCAATGCGGTGCGGCGTTC
CCGCGCCGGGCTCGCCGATCCGAACCGGCCGAGCGGCTCCTTCCTGTTCCTCGGCCCGACCGGGGTCGGCAAGACCGAGC
TGTGCAAGGCGCTGGCCGAGTTCCTCTTCGATACCGAGGAGGCCCTGGTGCGCATCGACATGTCCGAGTTCATGGAGAAG
CACTCGGTAGCCCGCTTGATCGGCGCCCCTCCGGGGTATGTCGGCTATGAGGAGGGCGGCTACCTGACCGAGGCGGTGCG
CCGCAAGCCTTACTCCGTGGTGCTGATGGACGAGGTGGAAAAGGCTCACCCCGATGTGTTCAACATCCTTCTGCAGGTGC
TGGAGGACGGTCGTCTGACCGATAGCCACGGGCGTACCGTGGACTTCAAGAACACCGTGGTGGTGATGACTTCCAACCTT
GGTTCGGCGCAGATCCAGGAGCTGGCCGGCGATCGCGAGGCGCAGCGGGCGGCGGTGATGGATGCGGTAAGCCACCATTT
CCGGCCGGAGTTCATCAACCGCATCGACGAGGTGGTGGTATTCGACCCGCTGGCCCGCGAGCAGATCGCCGGCATCGCCG
AGATTCAGTTGAAGCGCCTGCGCCAGCGTCTGGCCGAGCGCGAGCTGAGCCTCGAACTTTCCGATGAGGCCCTGGACAAG
CTGATCGCCGTCGGTTACGACCCGGTCTACGGGGCACGGCCCCTGAAGCGGGCGATCCAGCGCTGGATCGAGAACCCGCT
GGCGCAGCAGATTCTCGCCGGGCAGTTCGCGCCTGGCGCGAAGATCTTCGCCAGGGTGGAGGGCGACGAGATCGTCTTTG
GCTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (203-334)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-842)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• AAA lid domain (AAA_lid_9) (342-444)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

3D structure

• AlphaFold DB: C1DPJ2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.777	100	0.491
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.166	100	0.429
clpE	Streptococcus mutans UA159	48.22	78.923	0.381
clpC	Lactococcus lactis subsp. cremoris KW2	46.957	80.796	0.379
clpE	Streptococcus pneumoniae TIGR4	46.569	80.211	0.374
clpE	Streptococcus pneumoniae Rx1	46.423	80.211	0.372
clpE	Streptococcus pneumoniae D39	46.423	80.211	0.372
clpE	Streptococcus pneumoniae R6	46.423	80.211	0.372