Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   V4939_RS04245 Genome accession   NZ_CP144733
Coordinates   885273..886619 (+) Length   448 a.a.
NCBI ID   WP_012699764.1    Uniprot ID   C1DPB1
Organism   Azotobacter vinelandii DJ     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 880273..891619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4939_RS04220 (V4939_04220) - 881194..881643 (-) 450 WP_012699759.1 YetF domain-containing protein -
  V4939_RS04225 (V4939_04225) - 881654..882208 (-) 555 WP_012699760.1 hypothetical protein -
  V4939_RS04230 (V4939_04230) - 882460..883320 (+) 861 WP_012699761.1 SDR family oxidoreductase -
  V4939_RS04235 (V4939_04235) - 883524..884033 (-) 510 WP_012699762.1 DUF892 family protein -
  V4939_RS04240 (V4939_04240) - 884291..884803 (+) 513 WP_012699763.1 DUF4142 domain-containing protein -
  V4939_RS04245 (V4939_04245) luxO 885273..886619 (+) 1347 WP_012699764.1 sigma-54 dependent transcriptional regulator Regulator
  V4939_RS04250 (V4939_04250) - 886741..886926 (-) 186 WP_012699765.1 general stress protein -
  V4939_RS04255 (V4939_04255) - 887174..887587 (+) 414 WP_012699766.1 CopD family protein -
  V4939_RS04260 (V4939_04260) - 887622..888074 (-) 453 WP_231876318.1 DUF2231 domain-containing protein -
  V4939_RS04265 (V4939_04265) coxB 888141..889088 (+) 948 WP_012699768.1 cytochrome c oxidase subunit II -
  V4939_RS04270 (V4939_04270) ctaD 889085..891592 (+) 2508 WP_012699769.1 cytochrome c oxidase subunit I -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49302.51 Da        Isoelectric Point: 6.6964

>NTDB_id=847515 V4939_RS04245 WP_012699764.1 885273..886619(+) (luxO) [Azotobacter vinelandii DJ]
MKPTTEVTGRILLVDDDPVILRTFRSCLEERGYSAMSAGSGPQAEALLQHHVFDLCFLDLRLGRENGLSILQRLRSQAPW
MRVVIVTAMSAVNTAVEAIKSGASDYLVKPCSPDQLCRVTAKQLETGPLASRLEALEGELRQAGDAFGSDNPTMMAVLET
ARQVADTDANILVLGESGTGKGELARAIHGWSRRAKKPFVTISCPSLSAELMESEMFGHSRGAFTGATESTLGRVNQADG
GTLFLDEIGDFPLSLQPKLLRFIQDKEYERIGDPVTRQADVRILAATNLDLEAMVQAGRFREDLLYRINVITLHLPPLRE
RSEDILVLAERFLRMFVRNYGRPARRFGEAAQAALLGYHWPGNIRELRNVVERTSIICPQEVIGTSHLGLGEQPGGSVPR
VGMPLRLEELEKAHITAVLASSETLEQAARTLGIDASTLYRKRKQYGL

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=847515 V4939_RS04245 WP_012699764.1 885273..886619(+) (luxO) [Azotobacter vinelandii DJ]
ATGAAACCAACGACGGAAGTCACCGGCCGCATTCTCTTGGTGGATGACGATCCGGTAATACTGCGCACGTTCCGTTCCTG
TCTCGAAGAGCGTGGCTACAGCGCGATGAGTGCCGGCAGCGGGCCGCAGGCGGAGGCGCTGTTGCAACACCATGTCTTCG
ATCTGTGTTTCCTCGATCTGCGTCTGGGCAGGGAAAACGGCCTATCGATACTGCAGCGCCTGCGCAGCCAGGCGCCCTGG
ATGCGGGTGGTGATAGTCACCGCCATGAGCGCCGTGAACACGGCGGTCGAGGCCATAAAGTCCGGCGCCTCGGACTATCT
GGTCAAGCCCTGCAGCCCCGACCAGCTATGCCGGGTCACGGCCAAGCAACTGGAGACCGGCCCGCTGGCATCGCGCCTGG
AGGCGCTGGAGGGCGAGTTGCGCCAGGCCGGCGATGCCTTCGGCTCGGACAATCCGACGATGATGGCGGTGCTGGAGACC
GCCCGGCAGGTGGCGGACACCGACGCCAATATCCTCGTTCTCGGCGAATCGGGAACCGGCAAGGGCGAGCTGGCGCGCGC
CATCCATGGCTGGAGCCGGCGGGCGAAAAAGCCCTTCGTGACCATCAGTTGTCCTTCGCTGTCCGCCGAGCTGATGGAGA
GCGAGATGTTCGGGCACAGCCGCGGCGCCTTCACCGGGGCCACGGAGAGCACCCTGGGGCGGGTCAACCAGGCCGACGGC
GGTACGCTGTTTCTCGACGAGATCGGCGACTTTCCCCTGTCCCTGCAGCCCAAGCTGCTGCGCTTCATCCAGGACAAGGA
GTACGAGCGGATCGGCGATCCGGTGACCCGCCAGGCCGACGTGCGCATCCTCGCCGCCACCAACCTCGATCTGGAGGCCA
TGGTGCAGGCCGGGCGCTTTCGCGAGGACCTGCTGTACCGGATCAACGTGATCACCCTGCATCTGCCGCCGCTGCGCGAG
CGTTCCGAGGACATCCTCGTCCTGGCCGAGCGTTTCCTGCGGATGTTCGTCAGGAACTACGGGCGTCCGGCGCGCCGCTT
CGGCGAGGCGGCGCAGGCGGCCCTGCTGGGCTACCACTGGCCGGGCAACATCCGCGAGCTGCGCAACGTGGTGGAGCGGA
CCAGCATCATCTGTCCGCAGGAGGTAATCGGGACGAGTCACCTGGGACTGGGCGAGCAGCCGGGTGGCAGCGTGCCGCGG
GTGGGCATGCCGCTGCGTCTCGAGGAACTGGAGAAGGCCCATATCACCGCGGTGCTGGCGAGCAGCGAGACCCTCGAACA
GGCCGCCAGGACGCTCGGCATCGATGCTTCGACGCTGTATCGCAAACGCAAACAGTATGGCCTGTGA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(150-313)

Response regulator receiver domain (Response_reg)

(11-118)

Bacterial regulatory protein, Fis family (HTH_8)

(407-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DPB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

36.667

100

0.368