Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   V4939_RS02175 Genome accession   NZ_CP144733
Coordinates   444110..446944 (-) Length   944 a.a.
NCBI ID   WP_012699328.1    Uniprot ID   C1DKP0
Organism   Azotobacter vinelandii DJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 439110..451944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4939_RS02140 (V4939_02140) secY 439375..440703 (+) 1329 WP_041806896.1 preprotein translocase subunit SecY -
  V4939_RS02145 (V4939_02145) rpmJ 440732..440848 (+) 117 WP_012699323.1 50S ribosomal protein L36 -
  V4939_RS02150 (V4939_02150) rpsM 440982..441338 (+) 357 WP_012699324.1 30S ribosomal protein S13 -
  V4939_RS02155 (V4939_02155) rpsK 441369..441758 (+) 390 WP_003093689.1 30S ribosomal protein S11 -
  V4939_RS02160 (V4939_02160) rpsD 441775..442395 (+) 621 WP_012699325.1 30S ribosomal protein S4 -
  V4939_RS02165 (V4939_02165) rpoA 442418..443419 (+) 1002 WP_012699326.1 DNA-directed RNA polymerase subunit alpha -
  V4939_RS02170 (V4939_02170) rplQ 443464..443856 (+) 393 WP_012699327.1 50S ribosomal protein L17 -
  V4939_RS02175 (V4939_02175) uvrA 444110..446944 (-) 2835 WP_012699328.1 excinuclease ABC subunit UvrA Machinery gene
  V4939_RS02180 (V4939_02180) - 447077..448465 (+) 1389 WP_338460361.1 MFS transporter -
  V4939_RS02185 (V4939_02185) ssb 448475..448978 (+) 504 WP_012699330.1 single-stranded DNA-binding protein Machinery gene
  V4939_RS02190 (V4939_02190) - 449050..449949 (-) 900 WP_012699331.1 LysR family transcriptional regulator -
  V4939_RS02195 (V4939_02195) - 450081..450818 (+) 738 WP_012699332.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104098.89 Da        Isoelectric Point: 6.9573

>NTDB_id=847511 V4939_RS02175 WP_012699328.1 444110..446944(-) (uvrA) [Azotobacter vinelandii DJ]
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDAIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPEHDVPLEAQTVSQMVDQVLALPESSKLMLLAPVVRERKG
EHLSIFEELRAQGFVRARVDGRLFELDELPKLDKQKKHSIDVVVDRFKVRDDLQQRLAESFETALKLADGIALVVPMEGE
TGDELIFSARFACPHCGHSIGELEPKLFSFNNPAGACPSCDGLGVKQYFDPRRLVNGKLSLAEGAIRGWDRRNVYYFQML
GSLAAHYGFSLEEPFENLPASVQKALLHGSGRESIEFRYLNDRGDIVVRAHPFEGIISNLERRYRETESASVREELAKLL
SSQPCPDCRGTRLRREARHVWVGEKTLPAVTALPVGEACGYFAGLSLSGRRGEIAGKILKEIRERLQFLVNVGLDYLTLD
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLATLTHLRNLGNTVIVVEHDEDAIRLADYLVDIG
PGAGVHGGQIVAEGAPAEVMAHPDSLTGKYLSGRLKIEVPAARTPRDVKRLLKLKGARGNNLQNVDLEIPVGLFTCITGV
SGSGKSTLINNTLFPLTAMALNGSSGLETAPHDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPES
RSRGYNPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCRGKRYNRETLEVKYKGKNIHEVLEMTIEEARDFFD
AVPAIARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDH
GNTVVVIEHNLDVIKTADWIVDLGPEGGSRGGRIIAVGTPEQVAQMPQSHTGRFLAPLLERDRA

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=847511 V4939_RS02175 WP_012699328.1 444110..446944(-) (uvrA) [Azotobacter vinelandii DJ]
TTGGACAAGATCCTGATCCGTGGGGCGCGCACCCACAACCTGAAGAACATCGACCTGACCCTGCCGCGCGACAAACTGAT
CGTTATCACCGGCCTGTCCGGTTCCGGCAAATCCTCGCTGGCCTTCGACACCCTCTATGCCGAAGGCCAGCGCCGCTACG
TGGAGTCCCTCTCGGCCTACGCCCGGCAATTCCTGTCGATGATGGAAAAGCCCGATGTCGACGCCATCGAGGGTCTTTCG
CCGGCGATTTCCATCGAGCAGAAATCGACTTCGCACAACCCGCGCTCCACCGTCGGCACCATTACCGAGATCTACGACTA
CCTGCGCCTGCTCTACGCGCGTGTCGGCACCCCACGCTGCCCGGAACACGACGTGCCGCTGGAAGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTGCTCGCGCTGCCGGAAAGCAGCAAGCTGATGCTATTGGCCCCGGTGGTCCGCGAGCGCAAGGGC
GAACACCTCTCGATCTTCGAGGAGTTGCGTGCCCAGGGGTTCGTCCGCGCACGAGTCGACGGCAGGCTTTTCGAACTGGA
CGAGCTGCCCAAGCTGGACAAGCAGAAGAAGCACAGCATCGACGTGGTGGTGGATCGCTTCAAGGTACGCGACGACTTGC
AGCAGCGCCTGGCCGAGTCCTTCGAGACCGCGCTGAAGCTGGCCGACGGCATCGCCCTGGTGGTACCGATGGAGGGCGAG
ACGGGCGACGAGTTGATCTTCTCCGCACGCTTCGCCTGCCCCCACTGCGGACACTCGATCGGCGAGCTGGAGCCCAAGCT
GTTCTCCTTCAATAACCCGGCCGGCGCCTGCCCCTCCTGCGACGGCCTTGGCGTCAAGCAGTACTTCGACCCGCGCCGGC
TGGTCAACGGCAAGCTGTCTCTCGCCGAGGGCGCGATCCGCGGCTGGGACAGGCGCAACGTCTACTATTTCCAGATGCTC
GGTTCGCTGGCCGCACACTACGGCTTCAGCCTCGAAGAGCCGTTCGAGAACCTGCCGGCCAGCGTGCAGAAGGCCCTGTT
GCACGGCAGCGGCCGCGAGAGCATCGAGTTCCGCTATCTCAACGACCGCGGCGACATCGTGGTCCGGGCCCATCCGTTCG
AGGGCATCATTTCCAACCTGGAACGCCGCTACCGCGAAACCGAATCCGCCAGCGTGCGCGAGGAACTGGCCAAGCTGCTC
AGCAGCCAGCCCTGCCCCGACTGCCGCGGCACCCGCCTGCGCCGCGAGGCGCGGCACGTCTGGGTCGGCGAAAAGACCCT
GCCGGCGGTCACCGCCCTGCCGGTGGGTGAAGCCTGTGGCTATTTCGCCGGCTTGTCGCTGAGCGGTCGACGCGGCGAGA
TCGCCGGGAAGATCCTCAAGGAGATCCGCGAGCGCTTGCAGTTTCTGGTCAACGTCGGCCTCGACTACCTGACTCTGGAT
CGCAGCGCCGATACCCTTTCCGGCGGCGAGGCGCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCTGGTCGGGGT
GATGTACATCCTCGACGAGCCTTCCATCGGTCTGCACCAGCGCGATAACGAGCGCCTGCTGGCTACCCTCACCCACCTGC
GCAACCTGGGCAACACAGTGATCGTGGTGGAGCACGACGAGGATGCCATCCGCCTGGCCGACTATCTGGTCGACATCGGC
CCGGGCGCCGGCGTGCACGGTGGGCAAATCGTCGCCGAGGGTGCACCGGCCGAGGTGATGGCCCATCCCGACTCGTTGAC
CGGCAAATACCTCTCCGGCCGCCTGAAGATCGAAGTTCCGGCCGCACGCACCCCGCGCGATGTCAAACGGCTCCTCAAGC
TCAAGGGGGCCCGCGGCAACAACCTGCAGAATGTCGACCTGGAGATCCCGGTGGGCCTGTTCACCTGCATCACCGGAGTG
TCCGGGTCGGGCAAGTCGACCCTGATCAACAACACCCTGTTTCCTCTCACCGCCATGGCGCTGAACGGCAGCAGTGGTCT
GGAAACCGCCCCCCACGACAGCTTCGACGGCTTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATTGGCA
GAACGCCACGCTCGAACCCGGCGACCTACACCGGACTGTTCACCCCCATCCGCGAACTGTTCGCCGGTGTGCCGGAGTCA
CGCTCGCGCGGCTACAACCCCGGGCGCTTTTCCTTCAACGTCAAGGGCGGTCGCTGCGAGGCTTGCCAGGGCGACGGCGT
GATCAAGGTGGAGATGCATTTTCTGCCGGACATCTACGTTCCCTGCGACGTCTGCAGGGGCAAGCGCTACAACCGCGAAA
CGCTCGAGGTGAAGTACAAGGGCAAGAACATCCACGAAGTGCTGGAGATGACCATCGAGGAAGCCCGCGACTTCTTCGAT
GCCGTACCGGCGATAGCGCGCAAGCTGCAGACGCTCATCGACGTCGGCCTCTCCTACATTCGCCTGGGCCAGAGCGCCAC
GACCCTGTCCGGCGGCGAGGCGCAGCGGGTCAAGCTGAGCCGCGAACTGTCGAAACGGGATACCGGCAAGACCCTGTACA
TCCTCGACGAGCCCACCACGGGCCTGCACTTCGCCGATATCCAGCAACTCCTGGACGTACTGCATCGACTGCGCGACCAC
GGCAACACCGTGGTGGTGATCGAGCACAACCTGGATGTGATCAAGACCGCCGACTGGATCGTCGACCTGGGCCCCGAAGG
CGGCTCGCGGGGCGGCCGGATCATCGCCGTCGGCACGCCCGAGCAGGTCGCGCAGATGCCGCAATCGCACACCGGACGCT
TCCTCGCGCCCCTGCTGGAGCGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)

UvrA interaction domain (UvrA_inter)

(130-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DKP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.721

99.47

0.574
  uvrA Streptococcus pneumoniae TIGR4

57.721

99.47

0.574
  uvrA Streptococcus pneumoniae D39

57.721

99.47

0.574