Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QSV40_RS07675 Genome accession   NZ_CP128460
Coordinates   1639331..1639957 (+) Length   208 a.a.
NCBI ID   WP_047366247.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain 21KM2472     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634331..1644957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV40_RS07655 (QSV40_07655) - 1634725..1636485 (-) 1761 WP_063156188.1 Lon protease family protein -
  QSV40_RS07660 (QSV40_07660) matP 1636672..1637124 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  QSV40_RS07665 (QSV40_07665) ompA 1637194..1638249 (-) 1056 WP_020884794.1 porin OmpA -
  QSV40_RS07670 (QSV40_07670) sulA 1638604..1639113 (-) 510 WP_025204536.1 SOS-induced cell division inhibitor SulA -
  QSV40_RS07675 (QSV40_07675) sxy/tfoX 1639331..1639957 (+) 627 WP_047366247.1 TfoX/Sxy family DNA transformation protein Regulator
  QSV40_RS07680 (QSV40_07680) yccS 1639914..1642076 (-) 2163 WP_047366246.1 YccS family putative transporter -
  QSV40_RS07685 (QSV40_07685) - 1642096..1642542 (-) 447 WP_063156187.1 YccF domain-containing protein -
  QSV40_RS07690 (QSV40_07690) helD 1642666..1644720 (+) 2055 WP_063156186.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23892.40 Da        Isoelectric Point: 9.2568

>NTDB_id=847476 QSV40_RS07675 WP_047366247.1 1639331..1639957(+) (sxy/tfoX) [Enterobacter ludwigii strain 21KM2472]
MKKISYERIYRSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=847476 QSV40_RS07675 WP_047366247.1 1639331..1639957(+) (sxy/tfoX) [Enterobacter ludwigii strain 21KM2472]
ATGAAAAAGATATCTTATGAACGGATTTATAGATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTTGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTCTTAACCCTCATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGTTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.621

97.596

0.572