Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QN310_RS30055 Genome accession   NZ_CP128411
Coordinates   6326221..6326700 (-) Length   159 a.a.
NCBI ID   WP_016739386.1    Uniprot ID   A0A2Z4MR90
Organism   Brevibacillus brevis strain HNCS-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6321221..6331700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN310_RS30035 (QN310_30035) rplI 6322528..6322971 (-) 444 WP_015894079.1 50S ribosomal protein L9 -
  QN310_RS30040 (QN310_30040) - 6322998..6324935 (-) 1938 WP_137031588.1 DHH family phosphoesterase -
  QN310_RS30045 (QN310_30045) - 6324940..6325848 (-) 909 WP_289675370.1 DUF2232 domain-containing protein -
  QN310_RS30050 (QN310_30050) rpsR 6325950..6326180 (-) 231 WP_016739387.1 30S ribosomal protein S18 -
  QN310_RS30055 (QN310_30055) ssbA 6326221..6326700 (-) 480 WP_016739386.1 single-stranded DNA-binding protein Machinery gene
  QN310_RS30060 (QN310_30060) rpsF 6326730..6327017 (-) 288 WP_007720183.1 30S ribosomal protein S6 -
  QN310_RS30065 (QN310_30065) ychF 6327161..6328261 (-) 1101 WP_015894083.1 redox-regulated ATPase YchF -
  QN310_RS30070 (QN310_30070) - 6328616..6329605 (+) 990 WP_289675372.1 stalk domain-containing protein -
  QN310_RS30075 (QN310_30075) - 6329693..6330118 (-) 426 WP_289675373.1 cell wall hydrolase -
  QN310_RS30080 (QN310_30080) - 6330407..6330646 (-) 240 WP_289675374.1 sigma factor-like helix-turn-helix DNA-binding protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17230.12 Da        Isoelectric Point: 5.2753

>NTDB_id=847396 QN310_RS30055 WP_016739386.1 6326221..6326700(-) (ssbA) [Brevibacillus brevis strain HNCS-1]
MNKVILIGNLTKDPELRYTPNGVAVATFTVAVNRPRTNQAGERETDFINIVAWQKLADLCASYLRKGRQAAIEGRMQTRS
YDNKEGKKVYVTEVVAENVQFLGGRGNESGGDNSGYDPGPGMGGGNKPSGQRNNDYDPFGDPFASAGKPINISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=847396 QN310_RS30055 WP_016739386.1 6326221..6326700(-) (ssbA) [Brevibacillus brevis strain HNCS-1]
ATGAATAAAGTCATTCTCATCGGCAACCTGACGAAAGATCCTGAACTTCGCTACACGCCAAATGGCGTTGCCGTTGCTAC
TTTTACTGTGGCCGTCAATCGTCCCCGCACCAATCAAGCGGGAGAAAGAGAAACGGACTTCATTAACATTGTCGCTTGGC
AAAAACTTGCCGACCTGTGCGCAAGCTATTTGCGTAAAGGTAGACAAGCAGCCATCGAAGGACGTATGCAAACACGTTCC
TATGATAATAAAGAAGGTAAAAAGGTATACGTGACGGAAGTCGTTGCGGAGAACGTTCAATTTTTGGGCGGTCGAGGCAA
TGAATCTGGCGGAGACAATTCCGGATACGATCCAGGACCAGGCATGGGTGGCGGTAACAAACCATCCGGTCAACGAAATA
ATGACTACGATCCGTTTGGTGATCCTTTCGCGAGTGCAGGCAAGCCGATCAACATTTCAGATGATGACTTGCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4MR90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.488

100

0.579
  ssb Latilactobacillus sakei subsp. sakei 23K

43.787

100

0.465
  ssb Vibrio cholerae strain A1552

36.757

100

0.428
  ssb Neisseria gonorrhoeae MS11

37.143

100

0.409
  ssb Neisseria meningitidis MC58

36.571

100

0.403
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.384