Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QN310_RS28900 Genome accession   NZ_CP128411
Coordinates   6064097..6065050 (-) Length   317 a.a.
NCBI ID   WP_289675134.1    Uniprot ID   -
Organism   Brevibacillus brevis strain HNCS-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 6006627..6076935 6064097..6065050 within 0


Gene organization within MGE regions


Location: 6006627..6076935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN310_RS28640 (QN310_28640) - 6007026..6008102 (-) 1077 WP_289675090.1 tartrate dehydrogenase -
  QN310_RS28645 (QN310_28645) - 6008531..6008761 (-) 231 WP_289675091.1 hypothetical protein -
  QN310_RS28650 (QN310_28650) - 6008822..6009040 (-) 219 WP_289675093.1 hypothetical protein -
  QN310_RS28655 (QN310_28655) - 6009103..6010830 (-) 1728 WP_289678169.1 sigma-54-dependent Fis family transcriptional regulator -
  QN310_RS28660 (QN310_28660) - 6010937..6011326 (-) 390 WP_106779201.1 hypothetical protein -
  QN310_RS28665 (QN310_28665) - 6011334..6011534 (-) 201 WP_047070021.1 helix-turn-helix transcriptional regulator -
  QN310_RS28670 (QN310_28670) adh 6011831..6013351 (+) 1521 WP_106779198.1 aldehyde dehydrogenase -
  QN310_RS28675 (QN310_28675) - 6013355..6013696 (+) 342 WP_289675094.1 DUF779 domain-containing protein -
  QN310_RS28680 (QN310_28680) - 6013754..6015451 (-) 1698 WP_289675095.1 DEAD/DEAH box helicase -
  QN310_RS28685 (QN310_28685) - 6015471..6016091 (-) 621 WP_289675096.1 class I SAM-dependent methyltransferase -
  QN310_RS28690 (QN310_28690) - 6016266..6016958 (+) 693 WP_172139418.1 response regulator transcription factor -
  QN310_RS28695 (QN310_28695) - 6016936..6019089 (+) 2154 WP_289675097.1 histidine kinase dimerization/phospho-acceptor domain-containing protein -
  QN310_RS28700 (QN310_28700) - 6019155..6019418 (-) 264 WP_064200285.1 HPr family phosphocarrier protein -
  QN310_RS28705 (QN310_28705) - 6019458..6020297 (-) 840 WP_289675098.1 Cof-type HAD-IIB family hydrolase -
  QN310_RS28710 (QN310_28710) - 6020311..6021633 (-) 1323 WP_289675099.1 6-phospho-beta-glucosidase -
  QN310_RS28715 (QN310_28715) - 6021630..6021956 (-) 327 WP_144618589.1 PTS lactose/cellobiose transporter subunit IIA -
  QN310_RS28720 (QN310_28720) chbG 6021969..6022715 (-) 747 WP_289675100.1 chitin disaccharide deacetylase -
  QN310_RS28725 (QN310_28725) celB 6022737..6024089 (-) 1353 WP_289675101.1 PTS cellobiose transporter subunit IIC -
  QN310_RS28730 (QN310_28730) - 6024097..6024399 (-) 303 WP_015893830.1 PTS sugar transporter subunit IIB -
  QN310_RS28735 (QN310_28735) - 6024604..6027282 (-) 2679 WP_289675103.1 sigma-54-dependent transcriptional regulator -
  QN310_RS28740 (QN310_28740) - 6027482..6028861 (+) 1380 WP_289675104.1 HAMP domain-containing sensor histidine kinase -
  QN310_RS28745 (QN310_28745) - 6028881..6029519 (+) 639 WP_289675105.1 response regulator transcription factor -
  QN310_RS28750 (QN310_28750) - 6029812..6031920 (+) 2109 WP_289675106.1 AMP-binding protein -
  QN310_RS28755 (QN310_28755) lplT 6031922..6033112 (+) 1191 WP_289675107.1 lysophospholipid transporter LplT -
  QN310_RS28760 (QN310_28760) - 6033182..6035170 (-) 1989 WP_289675108.1 5'-nucleotidase C-terminal domain-containing protein -
  QN310_RS28765 (QN310_28765) recQ 6035323..6037098 (-) 1776 WP_289675109.1 DNA helicase RecQ -
  QN310_RS28770 (QN310_28770) - 6037443..6038732 (-) 1290 WP_289673973.1 IS3 family transposase -
  QN310_RS28775 (QN310_28775) - 6038979..6039524 (-) 546 WP_289675111.1 VanZ family protein -
  QN310_RS28780 (QN310_28780) - 6039641..6040750 (-) 1110 WP_289675112.1 ATP-binding protein -
  QN310_RS28785 (QN310_28785) - 6040740..6041429 (-) 690 WP_016739586.1 response regulator transcription factor -
  QN310_RS28790 (QN310_28790) - 6041594..6042361 (+) 768 WP_289675114.1 SDR family oxidoreductase -
  QN310_RS28795 (QN310_28795) fumC 6042425..6043813 (-) 1389 WP_289675115.1 class II fumarate hydratase -
  QN310_RS28800 (QN310_28800) - 6044292..6044987 (-) 696 WP_289675116.1 MgtC/SapB family protein -
  QN310_RS28805 (QN310_28805) - 6045143..6046498 (-) 1356 WP_289675118.1 MATE family efflux transporter -
  QN310_RS28810 (QN310_28810) - 6046635..6048119 (-) 1485 WP_289675119.1 lytic polysaccharide monooxygenase -
  QN310_RS28815 (QN310_28815) - 6048354..6050063 (-) 1710 WP_289675120.1 adenine deaminase C-terminal domain-containing protein -
  QN310_RS28820 (QN310_28820) - 6050082..6051143 (-) 1062 WP_289675121.1 ABC transporter ATP-binding protein -
  QN310_RS28825 (QN310_28825) - 6051159..6051947 (-) 789 WP_015893849.1 ABC transporter permease -
  QN310_RS28830 (QN310_28830) - 6051953..6052774 (-) 822 WP_289675124.1 ABC transporter permease -
  QN310_RS28835 (QN310_28835) - 6052801..6053730 (-) 930 WP_016739577.1 nucleoside hydrolase -
  QN310_RS28840 (QN310_28840) - 6053829..6054902 (-) 1074 WP_173626370.1 ABC transporter substrate-binding protein -
  QN310_RS28845 (QN310_28845) - 6055100..6055456 (-) 357 WP_289678170.1 DUF2294 domain-containing protein -
  QN310_RS28850 (QN310_28850) - 6055882..6056712 (+) 831 WP_289675125.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  QN310_RS28855 (QN310_28855) - 6056755..6057792 (+) 1038 WP_289675127.1 ATP-binding cassette domain-containing protein -
  QN310_RS28860 (QN310_28860) - 6057792..6058454 (+) 663 WP_173626372.1 methionine ABC transporter permease -
  QN310_RS28865 (QN310_28865) - 6058604..6059038 (+) 435 WP_289675128.1 hypothetical protein -
  QN310_RS28870 (QN310_28870) - 6059026..6059319 (+) 294 WP_015893858.1 YxcD family protein -
  QN310_RS28875 (QN310_28875) - 6059496..6060359 (+) 864 WP_015893859.1 ABC transporter ATP-binding protein -
  QN310_RS28880 (QN310_28880) - 6060565..6061221 (+) 657 WP_289675129.1 DJ-1/PfpI family protein -
  QN310_RS28885 (QN310_28885) - 6061311..6062300 (-) 990 WP_289675130.1 siderophore ABC transporter substrate-binding protein -
  QN310_RS28890 (QN310_28890) - 6062404..6063162 (-) 759 WP_289675131.1 ABC transporter ATP-binding protein -
  QN310_RS28895 (QN310_28895) - 6063159..6064100 (-) 942 WP_289675133.1 iron chelate uptake ABC transporter family permease subunit -
  QN310_RS28900 (QN310_28900) ceuB 6064097..6065050 (-) 954 WP_289675134.1 ABC transporter permease Machinery gene
  QN310_RS28905 (QN310_28905) - 6065299..6066066 (-) 768 WP_289675136.1 DUF4097 family beta strand repeat-containing protein -
  QN310_RS28910 (QN310_28910) - 6066267..6066941 (+) 675 WP_289675137.1 Crp/Fnr family transcriptional regulator -
  QN310_RS28915 (QN310_28915) - 6067029..6067391 (+) 363 WP_015893867.1 carboxymuconolactone decarboxylase family protein -
  QN310_RS28920 (QN310_28920) - 6067586..6067942 (+) 357 WP_087350560.1 response regulator -
  QN310_RS28925 (QN310_28925) - 6068062..6069398 (+) 1337 WP_289675140.1 IS3 family transposase -
  QN310_RS28930 (QN310_28930) - 6069464..6075379 (-) 5916 WP_289675141.1 AAA family ATPase -
  QN310_RS28935 (QN310_28935) - 6075509..6076135 (+) 627 WP_289675142.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35053.20 Da        Isoelectric Point: 9.6750

>NTDB_id=847394 QN310_RS28900 WP_289675134.1 6064097..6065050(-) (ceuB) [Brevibacillus brevis strain HNCS-1]
MKKRYLVVGLILLSFVSLFIGVKDISPWDLFNLTDDKVQVLWISRIPRLISIIIAGVSMSIAGLIMQQLTRNKFVSPTTA
GTEDSVRFGILVSLLVFADASSWVKLLVAFAFALLGTFVFMKILERIKFKDSIFIPLVGLMFGNIVGSITTFFAYKHDLM
QNMSAWLHGDFSTIMKGSYELLYISIPLVIIAYLYANKFTIAGMGEEFAINLGLNYKHVVNIGLVIVACVTSVVILTVGT
IPFLGLIIPNLVTIYLGDNLKKSLSHTALLGAVFVLACDILGRLIIFPYEISIGLMVGVIGSGIFVYLLMRRKAYEQ

Nucleotide


Download         Length: 954 bp        

>NTDB_id=847394 QN310_RS28900 WP_289675134.1 6064097..6065050(-) (ceuB) [Brevibacillus brevis strain HNCS-1]
ATGAAAAAGAGATATTTGGTTGTAGGACTTATTTTGCTATCGTTCGTTTCACTTTTTATTGGCGTGAAAGATATATCCCC
GTGGGATCTGTTTAATCTCACAGATGACAAAGTGCAAGTGCTGTGGATTAGCCGAATTCCGCGTTTGATTAGTATTATCA
TTGCAGGGGTCAGCATGAGTATCGCCGGATTGATCATGCAGCAGCTGACCCGAAACAAGTTCGTTTCTCCGACGACAGCA
GGGACAGAGGACTCCGTTCGCTTCGGAATATTGGTTTCACTCTTGGTATTCGCTGATGCGAGCTCTTGGGTGAAGCTACT
CGTTGCTTTTGCATTTGCTCTCTTGGGAACCTTTGTCTTTATGAAGATTCTCGAAAGAATCAAATTTAAAGACTCCATTT
TCATCCCGTTAGTGGGACTGATGTTTGGAAACATCGTCGGATCCATCACGACGTTTTTCGCTTATAAGCATGACCTGATG
CAAAACATGTCTGCTTGGTTGCATGGAGATTTCTCCACCATTATGAAAGGCAGCTACGAACTTTTGTACATAAGCATTCC
GCTAGTGATTATCGCTTACTTGTATGCGAACAAGTTCACTATTGCCGGAATGGGTGAAGAGTTTGCCATCAACCTCGGGT
TGAATTACAAGCATGTCGTCAACATTGGACTGGTCATTGTCGCTTGTGTGACTTCGGTAGTTATTCTCACAGTAGGGACA
ATCCCGTTTTTGGGGCTGATCATTCCCAACCTGGTTACGATCTACCTGGGAGATAACCTGAAAAAAAGCTTATCTCATAC
CGCTTTGCTTGGCGCGGTGTTTGTACTTGCTTGTGATATCCTGGGACGCCTCATCATCTTCCCATACGAGATTTCTATCG
GCTTGATGGTTGGGGTCATAGGCAGCGGGATATTCGTGTACTTACTCATGAGAAGAAAGGCATATGAACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.272

98.738

0.546