Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   V4942_RS04620 Genome accession   NZ_CP144687
Coordinates   882232..884544 (+) Length   770 a.a.
NCBI ID   WP_011173329.1    Uniprot ID   Q72J77
Organism   Thermus thermophilus strain TTHB27_delta_cmr4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 877232..889544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4942_RS04600 (V4942_04600) - 878055..878927 (-) 873 WP_011173325.1 3-hydroxybutyryl-CoA dehydrogenase -
  V4942_RS04605 (V4942_04605) - 878948..879802 (-) 855 WP_011173326.1 DMT family transporter -
  V4942_RS04610 (V4942_04610) - 879792..881012 (-) 1221 WP_011173327.1 pitrilysin family protein -
  V4942_RS04615 (V4942_04615) - 881005..882216 (-) 1212 WP_011173328.1 pitrilysin family protein -
  V4942_RS04620 (V4942_04620) recG/mmsA 882232..884544 (+) 2313 WP_011173329.1 ATP-dependent DNA helicase RecG Machinery gene
  V4942_RS04625 (V4942_04625) - 884544..885320 (+) 777 WP_011173330.1 hypothetical protein -
  V4942_RS04630 (V4942_04630) - 885274..886263 (-) 990 WP_011173331.1 pectin acetylesterase-family hydrolase -
  V4942_RS04635 (V4942_04635) atpD 886356..887027 (-) 672 WP_011173332.1 V-type ATP synthase subunit D -
  V4942_RS04640 (V4942_04640) - 887038..888474 (-) 1437 WP_011173333.1 V-type ATP synthase subunit B -

Sequence

Protein


Download         Length: 770 a.a.        Molecular weight: 85788.64 Da        Isoelectric Point: 9.6040

>NTDB_id=847384 V4942_RS04620 WP_011173329.1 882232..884544(+) (recG/mmsA) [Thermus thermophilus strain TTHB27_delta_cmr4]
MEGVTQEELKARLLKPLLRELQDGARDRVVVGGLEALVQNLARPFPKLLELFRGYGEKPQEERKRVLQEALRLLEGQGPS
PKGQAQASSRRLAPSDPAHLLAPPQSRRKLAELGLRTVRDVLHHYPRRYEDRRTLPGARYLEEGQKATLAVKVLAKELVK
TPRKGMQLVQVKAQDAWGWRITLVWFNQPWVLSQIEEGATLIVTGRVGRRNGLQLYVEHFEDEGTESLSTGRIVPIYPAK
EGVSQAFLRRTVHRALELALPLPDPLEAYREDLGLMPYAEALKAIHFPEDEEALKRALLRLKFDEYLLLELKALLEAGGM
VLGRSFRVEEAWVEAFKKALPFPLTRAQERVMGEIAKDMQSPRQMARLLQGDVGSGKTVVAAFALFLAAKNGAQGALMAP
TEILARQHYQNLTRYLFPLGIRVELLLGSMTAKEKEAAMARLLSGEAQVAVGTHALIQEGVGFRDLGLAVVDEEHRFGVL
QRRALLKLAKAPPDVLVMSATPIPRSLALTLYGDLEVSVLDEMPPGRVPVKTKVLPHRLRLQAYAFAREEVRKGHQVFVV
APAIEESEELDLKAATTLYEELKGLLPGVRLALLHGRMPAREKDEVMEAFRRGDYDLLVSTTVVEVGVDIPKATLIIVEN
AERFGLAQLHQLRGRVGRGGLQGYAIFIAGEAGQKTLKRLKILEESTDGFYIAEMDLKLRGPGELRGTRQSGYPELKLGD
LAEDTGIIEKARALAKAIVDKDPTLDLPEHRALKEELRAQAERVGFREVI

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=847384 V4942_RS04620 WP_011173329.1 882232..884544(+) (recG/mmsA) [Thermus thermophilus strain TTHB27_delta_cmr4]
ATGGAAGGCGTGACGCAAGAGGAGCTCAAGGCCAGGCTCCTCAAGCCCCTTCTCCGGGAGCTCCAGGACGGGGCCAGGGA
CCGGGTGGTGGTGGGGGGCCTCGAGGCCTTGGTGCAGAACCTCGCCCGCCCCTTCCCCAAGCTCCTGGAGCTCTTCCGGG
GCTACGGGGAAAAGCCTCAGGAAGAGCGGAAGCGGGTCTTGCAGGAGGCCCTCCGCCTCCTGGAGGGCCAAGGCCCCTCC
CCAAAGGGCCAGGCCCAGGCCTCCTCCAGGAGGCTCGCCCCTTCCGATCCCGCCCACCTCCTCGCCCCCCCGCAAAGCCG
GAGGAAGCTTGCCGAGCTCGGCCTGCGCACGGTGCGGGACGTCCTCCACCACTACCCCCGCCGCTACGAGGACCGCAGGA
CCCTCCCCGGGGCGCGCTACCTGGAGGAGGGGCAGAAGGCCACCCTGGCCGTGAAGGTCCTCGCCAAGGAGCTCGTCAAG
ACCCCCAGGAAGGGGATGCAGCTCGTCCAGGTGAAGGCCCAGGACGCCTGGGGGTGGCGCATCACCCTGGTCTGGTTCAA
CCAGCCCTGGGTCCTCTCCCAGATTGAGGAGGGGGCCACCCTCATCGTCACCGGGAGGGTGGGGCGGCGAAACGGCCTCC
AGCTCTACGTGGAGCACTTTGAGGACGAGGGCACCGAGTCGCTTTCCACCGGGCGGATCGTCCCCATCTACCCCGCCAAG
GAGGGGGTAAGCCAGGCCTTCCTCCGCCGCACCGTCCACAGGGCCCTGGAGCTCGCCCTCCCCCTCCCCGACCCCCTGGA
GGCCTACCGGGAGGACCTGGGCCTCATGCCCTACGCCGAGGCCCTGAAGGCCATCCACTTCCCCGAGGACGAGGAGGCCC
TGAAGCGGGCCCTCCTCCGCCTCAAGTTTGACGAGTACCTCCTCCTGGAGCTCAAGGCCCTCCTGGAGGCGGGAGGAATG
GTCCTCGGCCGGAGCTTCCGGGTGGAGGAGGCCTGGGTGGAGGCCTTCAAAAAGGCCCTCCCCTTCCCCCTCACCCGGGC
CCAGGAACGGGTCATGGGGGAGATCGCCAAGGACATGCAAAGCCCCCGCCAGATGGCCCGCCTCCTCCAGGGGGACGTGG
GCTCGGGGAAGACGGTGGTGGCGGCCTTCGCCCTCTTCCTCGCGGCCAAGAACGGGGCCCAGGGGGCCCTCATGGCCCCC
ACGGAGATCCTGGCCCGGCAGCACTACCAGAACCTCACCCGCTACCTCTTCCCCTTGGGGATCAGGGTGGAGCTCCTCCT
GGGCTCCATGACGGCCAAGGAGAAGGAGGCCGCCATGGCCCGGCTCCTCTCGGGGGAGGCCCAGGTGGCCGTGGGCACCC
ACGCCCTCATCCAGGAGGGGGTGGGCTTTAGGGACCTGGGCCTCGCCGTGGTGGACGAGGAGCACCGCTTCGGGGTCCTG
CAGCGCCGGGCCCTCCTCAAGCTGGCCAAGGCGCCGCCGGACGTCCTCGTCATGTCCGCCACCCCCATCCCCCGCTCCCT
GGCCTTAACCCTCTACGGGGACCTCGAGGTGAGCGTCCTGGACGAGATGCCCCCAGGACGCGTCCCGGTGAAGACCAAGG
TCCTCCCCCACCGCCTCCGCCTCCAGGCCTACGCCTTCGCCCGGGAGGAGGTGAGAAAGGGCCACCAGGTCTTCGTGGTG
GCCCCGGCCATTGAGGAGAGCGAGGAGCTGGACCTAAAGGCGGCCACCACCCTCTACGAGGAGCTTAAAGGCCTCCTCCC
CGGGGTGCGCCTGGCCCTCCTCCACGGGAGGATGCCCGCCCGGGAGAAGGACGAGGTGATGGAGGCCTTCCGGCGCGGGG
ACTACGACCTTTTGGTCTCCACCACGGTGGTGGAGGTGGGGGTGGACATCCCCAAGGCCACCCTCATCATCGTGGAGAAC
GCCGAGCGCTTCGGCCTCGCCCAGCTCCACCAGCTAAGGGGCCGGGTGGGCCGGGGGGGGCTTCAGGGCTACGCCATCTT
CATCGCGGGGGAGGCGGGCCAGAAGACCCTGAAGCGCCTCAAGATCCTGGAGGAGTCCACGGACGGCTTTTACATCGCCG
AGATGGACCTGAAGCTCAGGGGCCCTGGGGAGCTTCGCGGCACGCGGCAGTCAGGCTACCCCGAGCTCAAACTCGGCGAC
CTCGCCGAGGACACGGGGATCATTGAGAAGGCCCGGGCCCTGGCCAAGGCCATCGTGGACAAGGACCCCACCCTGGACCT
CCCCGAGCACCGGGCCCTCAAGGAGGAGCTCAGGGCCCAGGCGGAGCGGGTGGGGTTCCGGGAAGTGATCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(547-660)

DEAD/DEAH box helicase (DEAD)

(348-503)

RecG wedge domain (RecG_wedge)

(108-256)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(687-759)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72J77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

43.299

88.182

0.382
  recG/mmsA Streptococcus pneumoniae R36A

43.299

88.182

0.382