Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QN310_RS12695 Genome accession   NZ_CP128411
Coordinates   2517085..2518809 (+) Length   574 a.a.
NCBI ID   WP_289677602.1    Uniprot ID   -
Organism   Brevibacillus brevis strain HNCS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2512085..2523809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN310_RS12675 (QN310_12675) dxs 2512926..2514812 (+) 1887 WP_289677598.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QN310_RS12680 (QN310_12680) - 2514809..2515627 (+) 819 WP_289677599.1 TlyA family RNA methyltransferase -
  QN310_RS12685 (QN310_12685) - 2515756..2516613 (+) 858 WP_289677600.1 NAD(+)/NADH kinase -
  QN310_RS12690 (QN310_12690) argR 2516619..2517068 (+) 450 WP_289677601.1 transcriptional regulator ArgR -
  QN310_RS12695 (QN310_12695) recN 2517085..2518809 (+) 1725 WP_289677602.1 DNA repair protein RecN Machinery gene
  QN310_RS12700 (QN310_12700) spoIVB 2519048..2520382 (+) 1335 WP_289677603.1 SpoIVB peptidase -
  QN310_RS12705 (QN310_12705) spo0A 2520643..2521431 (+) 789 WP_016739922.1 sporulation transcription factor Spo0A -
  QN310_RS12710 (QN310_12710) - 2522061..2522360 (+) 300 WP_289677604.1 hypothetical protein -
  QN310_RS12715 (QN310_12715) - 2522391..2522585 (+) 195 WP_289677605.1 transcription initiation factor TFIIIB -
  QN310_RS12720 (QN310_12720) - 2522609..2523295 (+) 687 WP_289677606.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64682.58 Da        Isoelectric Point: 4.7198

>NTDB_id=847369 QN310_RS12695 WP_289677602.1 2517085..2518809(+) (recN) [Brevibacillus brevis strain HNCS-1]
MLVELSIRNFAIIKSVTVSFQKGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGEPRAEVEGLFELPPGHPGLDVC
KNVGVQIEQDGMLVVRRDISNQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQSDKHINWLDAYGESALGAAK
QEYSTLYTAYRKTKQDLERMARNDRELVQRIDLLQYQLDEIESATLTPGEDEKLMQQRKKWMNIEKVYSTIQDAYRALHG
DQKGMDWLGHAMGELERGVNYEEQLVPILEIVQSAYYQIEDVVHNLRQLSYQMDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATIQDELDDMHHYEDRLQQVEKQLQELAADLAVEALELSVIRSECAGKLAQEIEQQLKELHMERARFAIDVR
QTPDDDGVEIDGIKRFVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAGQRQVLCITHLPQVASMADAHFLIKKEMSENETETRVNRLSDDERVSELARMLSGAEVTAKTEEHA
REMILLGRERKTVS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=847369 QN310_RS12695 WP_289677602.1 2517085..2518809(+) (recN) [Brevibacillus brevis strain HNCS-1]
ATGCTAGTGGAACTCTCGATCCGAAATTTTGCCATCATCAAATCAGTGACGGTTTCATTCCAAAAAGGCTTAAACATCCT
GACAGGGGAGACTGGTGCCGGTAAATCCATCATTATCGATGCACTGGGACTGTTGTTAGGGGGCCGGGCGTCGGCTGATT
TTGTCCGATATGGTGAGCCTCGTGCAGAAGTGGAAGGACTGTTTGAATTGCCGCCTGGTCACCCTGGACTTGACGTTTGC
AAGAATGTCGGCGTCCAGATTGAGCAAGATGGAATGCTCGTGGTACGCCGAGATATCTCGAACCAAGGGAAGAGTATCAT
TCGAATCAATGGACAGCTCGTGACTCTCGCAATGCTGCGTGAGTTAGGGCCATGGCTGGTTACGGTACATGGACAACACG
ATACGCATATGCTGATGCAGTCTGACAAGCATATCAATTGGCTTGACGCGTACGGGGAAAGTGCGTTAGGAGCTGCGAAA
CAAGAGTACAGTACCCTGTATACGGCGTACCGCAAAACAAAGCAAGATCTGGAGCGTATGGCCCGCAACGATCGAGAGCT
GGTACAGCGTATCGATTTGTTGCAATATCAGCTCGATGAAATTGAATCGGCAACCCTTACGCCTGGTGAAGACGAGAAGC
TCATGCAGCAGCGGAAAAAGTGGATGAACATTGAAAAAGTTTATTCAACGATTCAAGATGCATACCGCGCATTACATGGT
GACCAGAAGGGCATGGATTGGTTGGGACATGCGATGGGAGAGCTCGAGCGTGGTGTGAACTACGAAGAACAGCTCGTTCC
GATTTTGGAGATAGTCCAATCGGCATACTATCAGATAGAAGATGTGGTGCATAACCTTCGTCAATTATCGTACCAAATGG
ATTTTGAACCGGAACAGCTGGCAGAAGTAGAGCGCCGCCTTGATCAAATCCAGTCGCTAAAACGCAAGTATGGCAAAAGC
GTAGACGATATTTTGGAGTACGCGGCCACGATTCAGGATGAATTGGATGACATGCATCACTACGAAGATCGTCTCCAGCA
GGTGGAAAAGCAATTGCAGGAGCTGGCAGCCGATTTGGCAGTGGAGGCATTGGAGCTGTCGGTTATTCGTTCCGAATGTG
CAGGAAAGCTCGCACAAGAAATCGAGCAGCAGCTAAAAGAACTGCACATGGAGAGGGCTCGTTTTGCCATCGACGTTAGA
CAGACACCGGATGATGATGGGGTAGAAATCGACGGAATCAAGCGCTTTGTAGATGCGAATGGAATGGATCAGATTGAGTT
TTTAATCTCACCTAACCCGGGAGAACCATTGCGTCCCTTGGCGAAGATTGCTTCTGGTGGGGAGTTGTCTCGCGTCATGC
TGGCCATTAAAACGATTTTGGCAGGCACGGATCAAGTGGAGACCCTTATTTTTGATGAAGTCGACACGGGTGTAAGCGGA
AGAGCAGCTCAAGCGATAGCAGAAAAGCTCGCCCGAGTCGCTGGGCAGCGCCAGGTCCTGTGCATTACTCACTTGCCACA
AGTCGCATCCATGGCAGATGCGCATTTTCTGATTAAAAAGGAAATGAGCGAGAATGAAACAGAGACGCGGGTCAATCGTT
TGTCTGATGATGAACGGGTATCAGAGCTGGCTCGTATGCTAAGCGGGGCAGAGGTCACAGCAAAAACAGAAGAACATGCG
CGCGAGATGATCCTCCTCGGCCGTGAACGAAAGACCGTCAGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.438

100

0.486