Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QN310_RS10570 Genome accession   NZ_CP128411
Coordinates   2095438..2095866 (-) Length   142 a.a.
NCBI ID   WP_289677245.1    Uniprot ID   -
Organism   Brevibacillus brevis strain HNCS-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2086694..2098068 2095438..2095866 within 0


Gene organization within MGE regions


Location: 2086694..2098068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN310_RS10520 (QN310_10520) - 2086694..2087155 (+) 462 WP_289677235.1 hypothetical protein -
  QN310_RS10525 (QN310_10525) - 2087613..2087963 (-) 351 WP_289677236.1 DUF2834 domain-containing protein -
  QN310_RS10530 (QN310_10530) - 2088550..2088897 (-) 348 WP_289677237.1 hypothetical protein -
  QN310_RS10535 (QN310_10535) - 2089423..2089803 (-) 381 WP_012685641.1 DUF1259 domain-containing protein -
  QN310_RS10540 (QN310_10540) - 2090428..2091243 (+) 816 WP_289677238.1 hypothetical protein -
  QN310_RS10545 (QN310_10545) - 2091234..2091617 (+) 384 WP_289677239.1 hypothetical protein -
  QN310_RS10550 (QN310_10550) - 2091831..2093330 (+) 1500 WP_289677241.1 recombinase family protein -
  QN310_RS10555 (QN310_10555) - 2093364..2093738 (+) 375 Protein_2003 sigma-70 family RNA polymerase sigma factor -
  QN310_RS10560 (QN310_10560) - 2094124..2094417 (-) 294 WP_289677242.1 hypothetical protein -
  QN310_RS10565 (QN310_10565) - 2094694..2095290 (+) 597 WP_289677244.1 hypothetical protein -
  QN310_RS10570 (QN310_10570) nucA/comI 2095438..2095866 (-) 429 WP_289677245.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QN310_RS10575 (QN310_10575) - 2096083..2097246 (-) 1164 WP_289677246.1 serine hydrolase domain-containing protein -
  QN310_RS10580 (QN310_10580) - 2097465..2097657 (+) 193 Protein_2008 hypothetical protein -
  QN310_RS10585 (QN310_10585) - 2097817..2098062 (-) 246 WP_289677247.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15500.72 Da        Isoelectric Point: 7.2417

>NTDB_id=847366 QN310_RS10570 WP_289677245.1 2095438..2095866(-) (nucA/comI) [Brevibacillus brevis strain HNCS-1]
MTQKKMLMLIVVLLIGAAYFFGLVPIENKTVNNGNVDHTIVFPSDRYPQTAKHIKEAIASGKSAVCTIDRSGADGNREKS
LKGIPTKKGYDRDEWPMAMCAEGGTGAHIEYISPSDNRGAGSWISNQLEDYPDGTKVEILVK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=847366 QN310_RS10570 WP_289677245.1 2095438..2095866(-) (nucA/comI) [Brevibacillus brevis strain HNCS-1]
ATGACCCAGAAAAAAATGCTGATGTTGATTGTGGTGCTGCTGATCGGCGCCGCCTATTTCTTTGGGCTTGTGCCAATAGA
GAACAAAACAGTCAACAACGGGAATGTAGACCATACGATCGTTTTTCCGTCTGATCGATATCCTCAGACTGCAAAGCATA
TCAAAGAAGCGATTGCCTCTGGGAAGTCAGCTGTATGTACAATTGACCGCAGTGGGGCAGATGGAAATCGCGAAAAATCA
CTCAAAGGTATTCCTACAAAAAAAGGATATGATCGAGATGAATGGCCAATGGCTATGTGTGCTGAGGGAGGCACAGGGGC
ACATATTGAATACATATCACCTTCAGATAATCGTGGGGCTGGATCCTGGATTTCCAATCAACTAGAGGATTATCCCGATG
GAACCAAGGTTGAAATCTTGGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.24

90.845

0.556